<OpenGeoSysProject>
  <meshes>
    <mesh axially_symmetric="false">meshes/column.vtu</mesh>
    <mesh axially_symmetric="false">meshes/column_zmin.vtu</mesh>
    <mesh axially_symmetric="false">meshes/column_xmin.vtu</mesh>
    <mesh axially_symmetric="false">meshes/column_xmax.vtu</mesh>
    <mesh axially_symmetric="false">meshes/column_ymin.vtu</mesh>
    <mesh axially_symmetric="false">meshes/column_ymax.vtu</mesh>
    <mesh axially_symmetric="false">meshes/column_zmax.vtu</mesh>
  </meshes>
  <processes>
    <process>
      <name>TRM</name>
      <type>THERMO_RICHARDS_MECHANICS</type>
      <subtype>StressSaturation_StrainPressureTemperature</subtype>
      <integration_order>4</integration_order>
      <constitutive_relation>
        <type>MFront</type>
        <behaviour>BentoniteBehaviour</behaviour>
        <library path_is_relative_to_prj_file="false">libOgsMFrontBehaviourBentoniteGeneralModForCTestsOnly</library>
        <initial_values>
          <state_variable name="e" parameter="e0" />
          <state_variable name="em" parameter="em0" />
          <state_variable name="eM" parameter="eM0" />
          <state_variable name="SrM" parameter="SrM0" />
          <state_variable name="a_scan" parameter="a_scan0" />
          <state_variable name="re" parameter="re0" />
        </initial_values>
      </constitutive_relation>
      <process_variables>
        <temperature>temperature</temperature>
        <pressure>pressure</pressure>
        <displacement>displacement</displacement>
      </process_variables>
      <secondary_variables>
        <secondary_variable name="sigma_total" />
        <secondary_variable name="epsilon" />
        <secondary_variable name="saturation" />
        <secondary_variable name="porosity" />
        <secondary_variable name="e" />
        <secondary_variable name="em" />
        <secondary_variable name="eM" />
        <secondary_variable name="SrM" />
        <secondary_variable name="a_scan" />
        <secondary_variable name="re" />
      </secondary_variables>
      <specific_body_force>0 0 0</specific_body_force>
      <initial_stress type="total">initial_stress</initial_stress>
    </process>
  </processes>
  <media>
    <medium>
      <phases>
        <phase>
          <type>AqueousLiquid</type>
          <properties>
            <property>
              <name>specific_heat_capacity</name>
              <type>Constant</type>
              <value>4181.3</value>
            </property>
            <property>
              <name>thermal_conductivity</name>
              <type>Constant</type>
              <value>0.58</value>
            </property>
            <property>
              <name>density</name>
              <type>Constant</type>
              <value>1000</value>
            </property>
            <property>
              <name>thermal_expansivity</name>
              <type>Constant</type>
              <value>4e-4</value>
            </property>
            <property>
              <name>viscosity</name>
              <type>Constant</type>
              <value>1.8e-3</value>
            </property>
          </properties>
        </phase>
        <phase>
          <type>Solid</type>
          <properties>
            <property>
              <name>density</name>
              <type>Constant</type>
              <value>2758.0</value>
            </property>
            <property>
              <name>thermal_conductivity</name>
              <type>Constant</type>
              <value>1.06</value>
            </property>
            <property>
              <name>specific_heat_capacity</name>
              <type>Constant</type>
              <value>880.0</value>
            </property>
            <property>
              <name>thermal_expansivity</name>
              <type>Constant</type>
              <value>3e-4</value>
            </property>
          </properties>
        </phase>
      </phases>
      <properties>
        <property>
          <name>saturation</name>
          <type>Constant</type>
          <value>0.345</value>
        </property>
        <property>
          <name>relative_permeability</name>
          <type>Constant</type>
          <value>1</value>
        </property>
        <property>
          <name>permeability</name>
          <type>Constant</type>
          <value>3e-20</value>
        </property>
        <property>
          <name>porosity</name>
          <type>PorosityFromMassBalance</type>
          <initial_porosity>phi0</initial_porosity>
          <minimal_porosity>0</minimal_porosity>
          <maximal_porosity>1</maximal_porosity>
        </property>
        <property>
          <name>bishops_effective_stress</name>
          <type>BishopsPowerLaw</type>
          <exponent>1.0</exponent>
        </property>
        <property>
          <name>biot_coefficient</name>
          <type>Constant</type>
          <value>1.0</value>
        </property>
        <property>
          <name>thermal_conductivity</name>
          <type>EffectiveThermalConductivityPorosityMixing</type>
        </property>
      </properties>
    </medium>
  </media>
  <parameters>
    <parameter>
      <mesh>column</mesh>
      <name>initial_stress</name>
      <type>Function</type>
      <expression>-2000000</expression>
      <expression>-2000000</expression>
      <expression>-2000000</expression>
      <expression>0</expression>
      <expression>0</expression>
      <expression>0</expression>
    </parameter>
    <parameter>
      <name>e0</name>
      <type>Constant</type>
      <value>0.67545</value>
    </parameter>
    <parameter>
      <name>em0</name>
      <type>Constant</type>
      <value>0.0</value>
    </parameter>
    <parameter>
      <name>eM0</name>
      <type>Constant</type>
      <value>0.0</value>
    </parameter>
    <parameter>
      <name>SrM0</name>
      <type>Constant</type>
      <value>0.0</value>
    </parameter>
    <parameter>
      <name>a_scan0</name>
      <type>Constant</type>
      <value>0.0</value>
    </parameter>
    <parameter>
      <name>re0</name>
      <type>Constant</type>
      <value>0.0</value>
    </parameter>
    <parameter>
      <name>phi0</name>
      <type>Constant</type>
      <value>0.403145</value>
    </parameter>
    <parameter>
      <name>temperature_IC</name>
      <type>Constant</type>
      <value>298.15</value>
    </parameter>
    <parameter>
      <name>pressure_IC</name>
      <type>Constant</type>
      <values>-100.e6</values>
    </parameter>
    <parameter>
      <name>displacement_IC</name>
      <type>Constant</type>
      <values>0 0 0</values>
    </parameter>
    <parameter>
      <name>temperature_BC</name>
      <type>Constant</type>
      <value>298.15</value>
    </parameter>
    <parameter>
      <name>pressure_BC_bot</name>
      <type>Constant</type>
      <value>-100.e6</value>
    </parameter>
    <parameter>
      <name>pressure_BC_top</name>
      <type>Function</type>
      <expression>if (t <=3600, -100.e6*(1-t/3600), 0)</expression>
    </parameter>
    <parameter>
      <name>displacement_BC_diriH</name>
      <type>Constant</type>
      <value>0</value>
    </parameter>
  </parameters>
  <process_variables>
    <process_variable>
      <name>temperature</name>
      <components>1</components>
      <order>1</order>
      <initial_condition>temperature_IC</initial_condition>
      <boundary_conditions>
        <boundary_condition>
          <mesh>column</mesh>
          <type>Dirichlet</type>
          <parameter>temperature_BC</parameter>
        </boundary_condition>
      </boundary_conditions>
    </process_variable>
    <process_variable>
      <name>pressure</name>
      <components>1</components>
      <order>1</order>
      <initial_condition>pressure_IC</initial_condition>
      <boundary_conditions>
        <boundary_condition>
          <mesh>column_zmax</mesh>
          <type>Dirichlet</type>
          <parameter>pressure_BC_top</parameter>
        </boundary_condition>
      </boundary_conditions>
    </process_variable>
    <process_variable>
      <name>displacement</name>
      <components>3</components>
      <order>2</order>
      <initial_condition>displacement_IC</initial_condition>
      <boundary_conditions>
        <boundary_condition>
          <mesh>column_xmin</mesh>
          <type>Dirichlet</type>
          <component>0</component>
          <parameter>displacement_BC_diriH</parameter>
        </boundary_condition>
        <boundary_condition>
          <mesh>column_xmax</mesh>
          <type>Dirichlet</type>
          <component>0</component>
          <parameter>displacement_BC_diriH</parameter>
        </boundary_condition>
        <boundary_condition>
          <mesh>column_ymin</mesh>
          <type>Dirichlet</type>
          <component>1</component>
          <parameter>displacement_BC_diriH</parameter>
        </boundary_condition>
        <boundary_condition>
          <mesh>column_ymax</mesh>
          <type>Dirichlet</type>
          <component>1</component>
          <parameter>displacement_BC_diriH</parameter>
        </boundary_condition>
        <boundary_condition>
          <mesh>column_zmin</mesh>
          <type>Dirichlet</type>
          <component>2</component>
          <parameter>displacement_BC_diriH</parameter>
        </boundary_condition>
        <boundary_condition>
          <mesh>column_zmax</mesh>
          <type>Dirichlet</type>
          <component>2</component>
          <parameter>displacement_BC_diriH</parameter>
        </boundary_condition>
      </boundary_conditions>
    </process_variable>
  </process_variables>
  <time_loop>
    <processes>
      <process ref="TRM">
        <nonlinear_solver>basic_newton</nonlinear_solver>
        <convergence_criterion>
          <type>PerComponentDeltaX</type>
          <norm_type>NORM2</norm_type>
          <reltols>1e0 1e-2 1e-2 1e-2 1e-2</reltols>
        </convergence_criterion>
        <time_discretization>
          <type>BackwardEuler</type>
        </time_discretization>
        <time_stepping>
          <type>IterationNumberBasedTimeStepping</type>
          <t_initial>0</t_initial>
          <t_end>360000</t_end>
          <initial_dt>1e-2</initial_dt>
          <minimum_dt>1e-4</minimum_dt>
          <maximum_dt>3600</maximum_dt>
          <number_iterations>4 9 11</number_iterations>
          <multiplier>2.0 1.0 0.5</multiplier>
        </time_stepping>
      </process>
    </processes>
    <output>
      <type>VTK</type>
      <prefix>bentonite_column</prefix>
      <timesteps>
        <pair>
          <repeat>1</repeat>
          <each_steps>1</each_steps>
        </pair>
      </timesteps>
      <variables />
      <suffix>ts{:timestep}_t_{:gtime}_sec</suffix>
    </output>
  </time_loop>
  <nonlinear_solvers>
    <nonlinear_solver>
      <name>basic_newton</name>
      <type>Newton</type>
      <max_iter>50</max_iter>
      <linear_solver>general_linear_solver</linear_solver>
    </nonlinear_solver>
  </nonlinear_solvers>
  <linear_solvers>
    <linear_solver>
      <name>general_linear_solver</name>
      <eigen>
        <solver_type>BiCGSTAB</solver_type>
        <precon_type>DIAGONAL</precon_type>
        <max_iteration_step>10000</max_iteration_step>
        <error_tolerance>1e-16</error_tolerance>
        <scaling>1</scaling>
      </eigen>
      <petsc>
        <parameters>-ksp_type bcgs
                    -pc_type jacobi
                    -ksp_rtol 1.e-14 -ksp_atol 1.e-14
                    -ksp_max_it 4000</parameters>
      </petsc>
    </linear_solver>
  </linear_solvers>
  <test_definition>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>HeatFlowRate</field>
      <absolute_tolerance>2.5e-16</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>MassFlowRate</field>
      <absolute_tolerance>2.8e-23</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>NodalForces</field>
      <absolute_tolerance>2.0e-13</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>SrM</field>
      <absolute_tolerance>4.9e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>a_scan</field>
      <absolute_tolerance>4.1e-13</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>displacement</field>
      <absolute_tolerance>1e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>dry_density_solid_ip</field>
      <absolute_tolerance>5.7e-12</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>e</field>
      <absolute_tolerance>7.0e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>eM</field>
      <absolute_tolerance>1.4e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>em</field>
      <absolute_tolerance>1.3e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>epsilon</field>
      <absolute_tolerance>2.9e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>epsilon_ip</field>
      <absolute_tolerance>2.8e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>intrinsic_permeability_ip</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>liquid_density_avg</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>liquid_density_ip</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_RungeKutta_InternalStateVariables[0]_ip</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_RungeKutta_InternalStateVariables[1]_ip</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_RungeKutta_InternalStateVariables[2]_ip</field>
      <absolute_tolerance>7.0e-12</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_RungeKutta_InternalStateVariables[3]_ip</field>
      <absolute_tolerance>1.4e-10</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_SrM_ip</field>
      <absolute_tolerance>5.4e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_a_scan_ip</field>
      <absolute_tolerance>4.4e-13</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_eM_ip</field>
      <absolute_tolerance>1.4e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_e_ip</field>
      <absolute_tolerance>6.8e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_em_ip</field>
      <absolute_tolerance>1.2e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>material_state_variable_re_ip</field>
      <absolute_tolerance>1.7e-13</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>porosity</field>
      <absolute_tolerance>2.8e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>porosity_avg</field>
      <absolute_tolerance>2.2e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>porosity_ip</field>
      <absolute_tolerance>2.2e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>pressure</field>
      <absolute_tolerance>7e-06</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>pressure_interpolated</field>
      <absolute_tolerance>7e-06</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>re</field>
      <absolute_tolerance>1.9e-13</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>relative_permeability_ip</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>saturation</field>
      <absolute_tolerance>2.5e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>saturation_avg</field>
      <absolute_tolerance>8e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>saturation_ip</field>
      <absolute_tolerance>3.0e-14</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>sigma_total</field>
      <absolute_tolerance>2.0e-06</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>sigma_total_avg</field>
      <absolute_tolerance>2.2e-07</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>sigma_total_ip</field>
      <absolute_tolerance>2.0e-06</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>temperature</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>temperature_interpolated</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>transport_porosity_ip</field>
      <absolute_tolerance>2.2e-15</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>velocity_ip</field>
      <absolute_tolerance>2e-19</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>viscosity_avg</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
    <vtkdiff>
      <regex>bentonite_column_ts_.*_t_.*_sec[.]vtu</regex>
      <field>viscosity_ip</field>
      <absolute_tolerance>0.0</absolute_tolerance>
      <relative_tolerance>0.0</relative_tolerance>
    </vtkdiff>
  </test_definition>
</OpenGeoSysProject>