ipDataToPointCloud.cpp File Reference

Detailed Description

Copyright

Copyright (c) 2012-2024, OpenGeoSys Community (http://www.opengeosys.org) Distributed under a Modified BSD License. See accompanying file LICENSE.txt or http://www.opengeosys.org/project/license

Definition in file ipDataToPointCloud.cpp.

#include <tclap/CmdLine.h>
#include <unordered_map>
#include "BaseLib/MPI.h"
#include "InfoLib/GitInfo.h"
#include "MeshLib/IO/readMeshFromFile.h"
#include "MeshLib/IO/writeMeshToFile.h"
#include "MeshLib/Mesh.h"
#include "MeshLib/Utils/IntegrationPointWriter.h"
#include "NumLib/Fem/InitShapeMatrices.h"
#include "NumLib/Fem/ShapeMatrixCache.h"

Include dependency graph for ipDataToPointCloud.cpp:

Go to the source code of this file.

Classes
struct	CellTypeOfTemplateElement< MeshLib::TemplateElement< ElementRule > >

Functions
template<typename MeshElement >
std::vector< std::array< double, 3 > >	interpolateElementCoords (MeshLib::Element const &e, NumLib::ShapeMatrixCache const &sm_cache)
std::unordered_map< MeshLib::CellType, std::vector< std::array< double, 3 > >(*)(MeshLib::Element const &, NumLib::ShapeMatrixCache const &)>	createElementCoordInterpolatorsForAllElementTypes ()
std::vector< MeshLib::Node * >	computePointCloudNodes (MeshLib::Mesh const &mesh, unsigned const integration_order)
unsigned	determineIntegrationOrder (MeshLib::Mesh const &mesh)
void	copyDoubleValuedFieldDataToPointCloud (MeshLib::Properties const &props_in, MeshLib::Properties &props_out, std::size_t const num_ips)
int	main (int argc, char **argv)

Function Documentation

computePointCloudNodes()

std::vector< MeshLib::Node * > computePointCloudNodes	(	MeshLib::Mesh const &	mesh,
		unsigned const	integration_order )

Definition at line 92 of file ipDataToPointCloud.cpp.

{
    NumLib::ShapeMatrixCache sm_cache{integration_order};
    auto const map_cell_type_to_element_coords_interpolator =
        createElementCoordInterpolatorsForAllElementTypes();
 
    std::vector<MeshLib::Node*> nodes;
 
    for (auto const* element : mesh.getElements())
    {
        auto const cell_type = element->getCellType();
 
        auto const it =
            map_cell_type_to_element_coords_interpolator.find(cell_type);
        if (it == map_cell_type_to_element_coords_interpolator.end())
        {
            OGS_FATAL("Unsupported cell type {} for element #{}",
                      MeshLib::CellType2String(cell_type), element->getID());
        }
 
        auto const& element_coords_interpolator = it->second;
        auto const coords = element_coords_interpolator(*element, sm_cache);
 
        for (auto& cs : coords)
        {
            nodes.push_back(new MeshLib::Node(cs, nodes.size()));
        }
    }
 
    return nodes;
}

References MeshLib::CellType2String(), createElementCoordInterpolatorsForAllElementTypes(), MeshLib::Mesh::getElements(), and OGS_FATAL.

Referenced by main().

copyDoubleValuedFieldDataToPointCloud()

void copyDoubleValuedFieldDataToPointCloud	(	MeshLib::Properties const &	props_in,
		MeshLib::Properties &	props_out,
		std::size_t const	num_ips )

Definition at line 167 of file ipDataToPointCloud.cpp.

{
    for (auto const& [prop_name, prop_in] : props_in)
    {
        auto const mesh_item_type = prop_in->getMeshItemType();
 
        if (mesh_item_type != MeshLib::MeshItemType::IntegrationPoint)
        {
            continue;
        }
 
        auto const num_comp = prop_in->getNumberOfGlobalComponents();
        auto const* prop_in_double =
            dynamic_cast<MeshLib::PropertyVector<double> const*>(prop_in);
 
        if (prop_in_double == nullptr)
        {
            INFO(
                "Ignoring non-double-valued property '{}' with {} components "
                "on {}",
                prop_name, num_comp, toString(mesh_item_type));
            continue;
        }
 
        DBUG("Converting property '{}' with {} components on {}", prop_name,
             num_comp, toString(mesh_item_type));
 
        if (props_out.existsPropertyVector<double>(prop_name))
        {
            OGS_FATAL(
                "A property vector with name '{}' already exists. Not "
                "adding it again",
                prop_name);
        }
 
        if (auto const num_ips_actual = prop_in_double->getNumberOfTuples();
            num_ips_actual != num_ips)
        {
            WARN(
                "Property vector '{}' has {} tuples, which differs from "
                "the number of integration points ({}). Skipping this "
                "property.",
                prop_name, num_ips_actual, num_ips);
        }
 
        auto* prop_out = props_out.createNewPropertyVector<double>(
            prop_name, MeshLib::MeshItemType::Node, num_comp);
 
        static_cast<std::vector<double>&>(*prop_out) = *prop_in_double;
    }
}

References MeshLib::Properties::createNewPropertyVector(), DBUG(), MeshLib::Properties::existsPropertyVector(), INFO(), MeshLib::IntegrationPoint, MeshLib::Node, OGS_FATAL, and WARN().

Referenced by main().

createElementCoordInterpolatorsForAllElementTypes()

std::unordered_map< MeshLib::CellType, std::vector< std::array< double, 3 > >(*)( MeshLib::Element const &, NumLib::ShapeMatrixCache const &)> createElementCoordInterpolatorsForAllElementTypes

(

)

Definition at line 58 of file ipDataToPointCloud.cpp.

{
    std::unordered_map<MeshLib::CellType,
                       std::vector<std::array<double, 3>> (*)(
                           MeshLib::Element const&,
                           NumLib::ShapeMatrixCache const&)>
        map_cell_type_to_element_coords_interpolator;
 
    map_cell_type_to_element_coords_interpolator.reserve(
        boost::mp11::mp_size<NumLib::AllElementTraitsLagrange>::value);
 
    boost::mp11::mp_for_each<NumLib::AllElementTraitsLagrange>(
        [&map_cell_type_to_element_coords_interpolator]<typename ETL>(ETL)
        {
            using MeshElement = typename ETL::Element;
            auto constexpr cell_type =
                CellTypeOfTemplateElement<MeshElement>::value;
 
            auto const [it, newly_inserted] =
                map_cell_type_to_element_coords_interpolator.emplace(
                    cell_type, interpolateElementCoords<MeshElement>);
 
            if (!newly_inserted)
            {
                OGS_FATAL(
                    "Coordinate interpolator for cell type {} is already "
                    "present",
                    MeshLib::CellType2String(cell_type));
            }
        });
 
    return map_cell_type_to_element_coords_interpolator;
}

References MeshLib::CellType2String(), interpolateElementCoords(), and OGS_FATAL.

Referenced by computePointCloudNodes().

determineIntegrationOrder()

unsigned determineIntegrationOrder

(

MeshLib::Mesh const &

mesh

)

Definition at line 125 of file ipDataToPointCloud.cpp.

{
    auto const& properties = mesh.getProperties();
 
    std::optional<unsigned> integration_order;
 
    for (auto const& [name, property] : properties)
    {
        if (property->getMeshItemType() !=
            MeshLib::MeshItemType::IntegrationPoint)
        {
            continue;
        }
 
        if (name == "IntegrationPointMetaData" || name == "OGS_VERSION")
        {
            continue;
        }
 
        auto const order =
            MeshLib::getIntegrationPointMetaData(properties, std::string(name))
                .integration_order;
 
        if (!integration_order)
        {
            integration_order = order;
        }
        else if (integration_order != order)
        {
            OGS_FATAL("Integration orders differ: {} != {}", *integration_order,
                      order);
        }
    }
 
    if (!integration_order)
    {
        OGS_FATAL("Integration order could not be determined.");
    }
 
    return *integration_order;
}

References MeshLib::getIntegrationPointMetaData(), MeshLib::Mesh::getProperties(), MeshLib::IntegrationPointMetaData::integration_order, MeshLib::IntegrationPoint, and OGS_FATAL.

Referenced by main().

interpolateElementCoords()

template<typename MeshElement >

std::vector< std::array< double, 3 > > interpolateElementCoords	(	MeshLib::Element const &	e,
		NumLib::ShapeMatrixCache const &	sm_cache )

Definition at line 24 of file ipDataToPointCloud.cpp.

{
    constexpr int dim = MeshElement::dimension;
    using ShapeFunction =
        NumLib::ShapeMatrixCache::ShapeFunctionHigherOrder<MeshElement>;
    using ShapeMatrices = EigenFixedShapeMatrixPolicy<ShapeFunction, dim>;
 
    auto const& Ns = sm_cache.NsHigherOrder<MeshElement>();
    std::vector<std::array<double, 3>> coords;
    coords.reserve(Ns.size());
 
    for (auto const& N : Ns)
    {
        coords.push_back(
            NumLib::interpolateCoordinates<ShapeFunction, ShapeMatrices>(e, N));
    }
 
    return coords;
}

References NumLib::interpolateCoordinates(), and NumLib::ShapeMatrixCache::NsHigherOrder().

Referenced by createElementCoordInterpolatorsForAllElementTypes().

main()

int main	(	int	argc,
		char **	argv )

Definition at line 221 of file ipDataToPointCloud.cpp.

{
    // TODO future additions to this tool might include:
    // -C --copy-cell-data
    // -N --interpolate-node-data
    // -I --add-cell-ids
    // -O --integration-order
    // --natural-coords add natural coordinates of integration points, or better
    //     not?
    // --no-data
    // --linear-shape-functions={pressure, ...} for the interpolation of nodal
    //     data
    // PVD support
    // handle other data than only double data
 
    TCLAP::CmdLine cmd(
        "Creates a point cloud mesh for the integration point data existing on "
        "a given input mesh.\n\n"
        "OpenGeoSys-6 software, version " +
            GitInfoLib::GitInfo::ogs_version +
            ".\n"
            "Copyright (c) 2012-2024, OpenGeoSys Community "
            "(http://www.opengeosys.org)",
        ' ', GitInfoLib::GitInfo::ogs_version);
    TCLAP::ValueArg<std::string> arg_out_file(
        "o", "output-file", "the output mesh (point cloud, VTU file)", true, "",
        "path");
    cmd.add(arg_out_file);
    TCLAP::ValueArg<std::string> arg_in_file(
        "i", "input-file", "the input mesh (VTU file)", true, "", "path");
    cmd.add(arg_in_file);
 
    cmd.parse(argc, argv);
 
    BaseLib::MPI::Setup mpi_setup(argc, argv);
 
    std::unique_ptr<MeshLib::Mesh const> mesh_in(
        MeshLib::IO::readMeshFromFile(arg_in_file.getValue()));
 
    auto const integration_order = determineIntegrationOrder(*mesh_in);
    auto nodes = computePointCloudNodes(*mesh_in, integration_order);
 
    MeshLib::Mesh point_cloud("point_cloud", std::move(nodes), {});
 
    copyDoubleValuedFieldDataToPointCloud(mesh_in->getProperties(),
                                          point_cloud.getProperties(),
                                          point_cloud.getNumberOfNodes());
 
    MeshLib::IO::writeMeshToFile(point_cloud, arg_out_file.getValue());
 
    return EXIT_SUCCESS;
}

References computePointCloudNodes(), copyDoubleValuedFieldDataToPointCloud(), determineIntegrationOrder(), GitInfoLib::GitInfo::ogs_version, MeshLib::IO::readMeshFromFile(), and MeshLib::IO::writeMeshToFile().