IdentifySubdomainMesh.cpp

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#include <range/v3/range/conversion.hpp>
#include <unordered_map>
#include <vector>
 
#include "BaseLib/RunTime.h"
#include "MeshLib/Elements/Element.h"
#include "MeshLib/Mesh.h"
#include "MeshLib/Node.h"
#include "MeshLib/Utils/addPropertyToMesh.h"
#include "MeshNodeSearcher.h"
 
namespace
{
std::vector<std::size_t> identifySubdomainMeshNodes(
    MeshLib::Mesh const& subdomain_mesh,
    MeshGeoToolsLib::MeshNodeSearcher const& mesh_node_searcher)
{
    // Convert nodes pointers needed for the mesh_node_searcher algorithm.
    auto const& nodes = subdomain_mesh.getNodes();
    std::vector<MathLib::Point3dWithID*> subdomain_points{begin(nodes),
                                                          end(nodes)};
 
    auto const& bulk_node_ids =
        mesh_node_searcher.getMeshNodeIDs(subdomain_points);
 
    if (bulk_node_ids.size() != subdomain_mesh.getNumberOfNodes())
    {
        OGS_FATAL(
            "Expected to find exactly one node in the bulk mesh for each node "
            "of the subdomain; Found {:d} nodes in the bulk mesh out of {:d} "
            "nodes in the subdomain.",
            bulk_node_ids.size(), subdomain_mesh.getNumberOfNodes());
    }
 
    return bulk_node_ids;
}
std::vector<std::size_t> identifySubdomainMeshNodes( {…}
 
std::vector<std::size_t> findElementsInMesh(
    std::vector<std::size_t> const& node_ids,
    std::vector<std::vector<std::size_t>> const& connected_element_ids_per_node)
{
    //
    // Count how often an element is shared by all nodes.
    //
    std::unordered_map<std::size_t, int> element_counts(8);
    for (auto const node_id : node_ids)
    {
        for (auto const element_id : connected_element_ids_per_node[node_id])
        {
            element_counts[element_id]++;
        }
    }
 
    //
    // Elements which are shared by as many nodes as the input nodes are the
    // desired elements.
    //
    auto const nnodes = node_ids.size();
    std::vector<std::size_t> element_ids;
    for (auto const& pair : element_counts)
    {
        if (pair.second == static_cast<int>(nnodes))
        {
            element_ids.push_back(pair.first);
        }
    }
 
    return element_ids;
}
std::vector<std::size_t> findElementsInMesh( {…}
 
std::vector<std::vector<std::size_t>> identifySubdomainMeshElements(
    MeshLib::Mesh const& subdomain_mesh, MeshLib::Mesh const& bulk_mesh)
{
    auto const& bulk_node_ids = *MeshLib::bulkNodeIDs(subdomain_mesh);
 
    // Allocate space for all elements for random insertion.
    std::vector<std::vector<std::size_t>> bulk_element_ids_map(
        subdomain_mesh.getNumberOfElements());
 
    // For each node a vector of connected element ids of that node.
    std::vector<std::vector<std::size_t>> connected_element_ids_per_node(
        bulk_mesh.getNumberOfNodes());
    for (auto const node_id : bulk_mesh.getNodes() | MeshLib::views::ids)
    {
        connected_element_ids_per_node[node_id] =
            bulk_mesh.getElementsConnectedToNode(node_id) |
            MeshLib::views::ids | ranges::to<std::vector>;
    }
 
    auto const& elements = subdomain_mesh.getElements();
#pragma omp parallel for
    for (std::ptrdiff_t j = 0; j < std::ssize(elements); ++j)
    {
        auto* const e = elements[j];
        std::vector<std::size_t> element_node_ids(e->getNumberOfBaseNodes());
        for (unsigned n = 0; n < e->getNumberOfBaseNodes(); ++n)
        {
            element_node_ids[n] = MeshLib::getNodeIndex(*e, n);
        }
        std::vector<std::size_t> element_node_ids_bulk(
            e->getNumberOfBaseNodes());
        std::transform(begin(element_node_ids), end(element_node_ids),
                       begin(element_node_ids_bulk),
                       [&bulk_node_ids](std::size_t const id)
                       { return bulk_node_ids[id]; });
 
        std::vector<std::size_t> bulk_element_ids = findElementsInMesh(
            element_node_ids_bulk, connected_element_ids_per_node);
 
        if (bulk_element_ids.empty())
        {
            ERR("No element could be found for the subdomain element {:d}. "
                "Corresponding bulk mesh node ids are:",
                e->getID());
            for (auto const i : element_node_ids_bulk)
            {
                ERR("\t{:d}", i);
            }
            OGS_FATAL(
                "Expect at least one element to be found in the bulk mesh.");
        }
 
        bulk_element_ids_map[e->getID()] = std::move(bulk_element_ids);
    }
 
    return bulk_element_ids_map;
}
std::vector<std::vector<std::size_t>> identifySubdomainMeshElements( {…}
 
void updateOrCheckExistingSubdomainProperty(
    MeshLib::Mesh& mesh, std::string_view property_name,
    std::vector<std::size_t> const& values,
    MeshLib::MeshItemType const mesh_item_type, bool const force_overwrite)
{
    auto& properties = mesh.getProperties();
    if (!properties.existsPropertyVector<std::size_t>(property_name))
    {
        addPropertyToMesh(mesh, property_name, mesh_item_type, 1, values);
        return;
    }
 
    //
    // Check the existing property against new values.
    //
    auto& original_property =
        *properties.getPropertyVector<std::size_t>(property_name);
    if (std::equal(begin(original_property), end(original_property),
                   begin(values), end(values)))
    {
        INFO(
            "There is already a '{:s}' property present in the subdomain mesh "
            "'{:s}' and it is equal to the newly computed values.",
            property_name, mesh.getName());
        return;
    }
 
    //
    // Property differs. Notify and update if forced.
    //
    WARN(
        "There is already a '{:s}' property present in the subdomain mesh "
        "'{:s}' and it is not equal to the newly computed values.",
        property_name,
        mesh.getName());
 
    if (!force_overwrite)
    {
        OGS_FATAL("The force overwrite flag was not specified, exiting.");
    }
 
    INFO("Overwriting '{:s}' property.", property_name);
    original_property.resize(values.size());
    std::copy(begin(values), end(values), begin(original_property));
}
void updateOrCheckExistingSubdomainProperty( {…}
}  // namespace
namespace {…}
 
namespace MeshGeoToolsLib
{
void identifySubdomainMesh(MeshLib::Mesh& subdomain_mesh,
                           MeshLib::Mesh const& bulk_mesh,
                           MeshNodeSearcher const& mesh_node_searcher,
                           bool const force_overwrite = false)
{
    BaseLib::RunTime time;
    time.start();
    auto const& bulk_node_ids =
        identifySubdomainMeshNodes(subdomain_mesh, mesh_node_searcher);
    INFO("identifySubdomainMesh(): identifySubdomainMeshNodes took {:g} s",
         time.elapsed());
 
    updateOrCheckExistingSubdomainProperty(
        subdomain_mesh, MeshLib::getBulkIDString(MeshLib::MeshItemType::Node),
        bulk_node_ids, MeshLib::MeshItemType::Node, force_overwrite);
 
    time.start();
    auto const& bulk_element_ids =
        identifySubdomainMeshElements(subdomain_mesh, bulk_mesh);
    INFO("identifySubdomainMesh(): identifySubdomainMeshElements took {:g} s",
         time.elapsed());
 
    // The bulk_element_ids could be of two types: one element per entry---this
    // is the expected case for the boundary meshes; multiple elements per
    // entry---this happens if the subdomain mesh lies inside the bulk mesh and
    // has lower dimension.
    // First find out the type, then add/check the CellData or FieldData.
    if (all_of(begin(bulk_element_ids), end(bulk_element_ids),
               [](std::vector<std::size_t> const& v) { return v.size() == 1; }))
    {
        // All vectors are of size 1, so the data can be flattened and
        // stored in CellData or compared to existing CellData.
        std::vector<std::size_t> unique_bulk_element_ids;
        unique_bulk_element_ids.reserve(bulk_element_ids.size());
        transform(begin(bulk_element_ids), end(bulk_element_ids),
                  back_inserter(unique_bulk_element_ids),
                  [](std::vector<std::size_t> const& v) { return v[0]; });
 
        updateOrCheckExistingSubdomainProperty(
            subdomain_mesh,
            MeshLib::getBulkIDString(MeshLib::MeshItemType::Cell),
            unique_bulk_element_ids, MeshLib::MeshItemType::Cell,
            force_overwrite);
    }
    else
    {
        // Some of the boundary elements are connected to multiple bulk
        // elements; Store the array in FieldData with additional CellData array
        // for the number of elements, which also provides the offsets.
        std::vector<std::size_t> flat_bulk_element_ids;
        flat_bulk_element_ids.reserve(2 * bulk_element_ids.size());  // Guess.
        std::vector<std::size_t> number_of_bulk_element_ids;
        number_of_bulk_element_ids.reserve(bulk_element_ids.size());
 
        for (std::vector<std::size_t> const& v : bulk_element_ids)
        {
            number_of_bulk_element_ids.push_back(v.size());
            flat_bulk_element_ids.insert(end(flat_bulk_element_ids), begin(v),
                                         end(v));
        }
 
        updateOrCheckExistingSubdomainProperty(
            subdomain_mesh, "number_bulk_elements", number_of_bulk_element_ids,
            MeshLib::MeshItemType::Cell, force_overwrite);
        updateOrCheckExistingSubdomainProperty(
            subdomain_mesh,
            MeshLib::getBulkIDString(MeshLib::MeshItemType::Cell),
            flat_bulk_element_ids, MeshLib::MeshItemType::IntegrationPoint,
            force_overwrite);
    }
}
void identifySubdomainMesh(MeshLib::Mesh& subdomain_mesh, {…}
}  // namespace MeshGeoToolsLib