CompareJacobiansJacobianAssembler.cpp

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#include "CompareJacobiansJacobianAssembler.h"
 
#include <sstream>
 
#include "BaseLib/ConfigTree.h"
#include "CreateJacobianAssembler.h"
#include "MathLib/LinAlg/Eigen/EigenMapTools.h"
 
namespace
{
void dump_py(std::ostream& fh, std::string const& var, double const val)
{
    fh << var << " = " << val << '\n';
}
 
void dump_py(std::ostream& fh, std::string const& var, std::size_t const val)
{
    fh << var << " = " << val << '\n';
}
 
template <typename Vec>
void dump_py_vec(std::ostream& fh, std::string const& var, Vec const& val)
{
    fh << var << " = np.array([";
    for (decltype(val.size()) i = 0; i < val.size(); ++i)
    {
        if (i != 0)
        {
            if (i % 8 == 0)
            {
                // Print at most eight entries on one line,
                // indent with four spaces.
                fh << ",\n    ";
            }
            else
            {
                fh << ", ";
            }
        }
        fh << val[i];
    }
    fh << "])\n";
}
 
void dump_py(std::ostream& fh, std::string const& var,
             std::vector<double> const& val)
{
    dump_py_vec(fh, var, val);
}
 
template <typename Derived>
void dump_py(std::ostream& fh, std::string const& var,
             Eigen::ArrayBase<Derived> const& val,
             std::integral_constant<int, 1> /*unused*/)
{
    dump_py_vec(fh, var, val);
}
 
template <typename Derived, int ColsAtCompileTime>
void dump_py(std::ostream& fh, std::string const& var,
             Eigen::ArrayBase<Derived> const& val,
             std::integral_constant<int, ColsAtCompileTime> /*unused*/)
{
    fh << var << " = np.array([\n";
    for (std::ptrdiff_t r = 0; r < val.rows(); ++r)
    {
        if (r != 0)
        {
            fh << ",\n";
        }
        fh << "    [";
        for (std::ptrdiff_t c = 0; c < val.cols(); ++c)
        {
            if (c != 0)
            {
                fh << ", ";
            }
            fh << val(r, c);
        }
        fh << "]";
    }
    fh << "])\n";
}
 
template <typename Derived>
void dump_py(std::ostream& fh, std::string const& var,
             Eigen::ArrayBase<Derived> const& val)
{
    dump_py(fh, var, val,
            std::integral_constant<int, Derived::ColsAtCompileTime>{});
}
 
template <typename Derived>
void dump_py(std::ostream& fh, std::string const& var,
             Eigen::MatrixBase<Derived> const& val)
{
    dump_py(fh, var, val.array());
}
 
const std::string msg_fatal =
    "The local matrices M or K or the local vectors b assembled with the two "
    "different Jacobian assemblers differ.";
 
}  // anonymous namespace
 
namespace ProcessLib
{
void CompareJacobiansJacobianAssembler::assembleWithJacobian(
    LocalAssemblerInterface& local_assembler, double const t, double const dt,
    std::vector<double> const& local_x, std::vector<double> const& local_x_prev,
    std::vector<double>& local_M_data, std::vector<double>& local_K_data,
    std::vector<double>& local_b_data, std::vector<double>& local_Jac_data)
{
    ++_counter;
 
    auto const num_dof = local_x.size();
    auto to_mat = [num_dof](std::vector<double> const& data)
    {
        if (data.empty())
        {
            return Eigen::Map<Eigen::Matrix<
                double, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor> const>(
                nullptr, 0, 0);
        }
 
        return MathLib::toMatrix(data, num_dof, num_dof);
    };
 
    // First assembly -- the one whose results will be added to the global
    // equation system finally.
    _asm1->assembleWithJacobian(local_assembler, t, dt, local_x, local_x_prev,
                                local_M_data, local_K_data, local_b_data,
                                local_Jac_data);
 
    auto const local_M1 = to_mat(local_M_data);
    auto const local_K1 = to_mat(local_K_data);
    auto const local_b1 = MathLib::toVector(local_b_data);
 
    std::vector<double> local_M_data2;
    std::vector<double> local_K_data2;
    std::vector<double> local_b_data2;
    std::vector<double> local_Jac_data2;
 
    // Second assembly -- used for checking only.
    _asm2->assembleWithJacobian(local_assembler, t, dt, local_x, local_x_prev,
                                local_M_data2, local_K_data2, local_b_data2,
                                local_Jac_data2);
 
    auto const local_M2 = to_mat(local_M_data2);
    auto const local_K2 = to_mat(local_K_data2);
    auto const local_b2 = MathLib::toVector(local_b_data2);
 
    auto const local_Jac1 = MathLib::toMatrix(local_Jac_data, num_dof, num_dof);
    auto const local_Jac2 =
        MathLib::toMatrix(local_Jac_data2, num_dof, num_dof);
 
    auto const abs_diff = (local_Jac2 - local_Jac1).array().eval();
    auto const rel_diff =
        (abs_diff == 0.0)
            .select(abs_diff,
                    2. * abs_diff /
                        (local_Jac1.cwiseAbs() + local_Jac2.cwiseAbs()).array())
            .eval();
 
    auto const abs_diff_mask =
        (abs_diff.abs() <= _abs_tol)
            .select(decltype(abs_diff)::Zero(abs_diff.rows(), abs_diff.cols()),
                    decltype(abs_diff)::Ones(abs_diff.rows(), abs_diff.cols()))
            .eval();
    auto const rel_diff_mask =
        (rel_diff.abs() <= _rel_tol)
            .select(decltype(rel_diff)::Zero(rel_diff.rows(), rel_diff.cols()),
                    decltype(rel_diff)::Ones(rel_diff.rows(), rel_diff.cols()))
            .eval();
 
    auto const abs_diff_OK = !abs_diff_mask.any();
    auto const rel_diff_OK = !rel_diff_mask.any();
 
    std::ostringstream msg_tolerance;
    bool tol_exceeded = true;
    bool fatal_error = false;
 
    if (abs_diff_OK)
    {
        tol_exceeded = false;
    }
    else
    {
        msg_tolerance << "absolute tolerance of " << _abs_tol << " exceeded";
    }
 
    if (rel_diff_OK)
    {
        tol_exceeded = false;
    }
    else
    {
        if (!msg_tolerance.str().empty())
        {
            msg_tolerance << " and ";
        }
 
        msg_tolerance << "relative tolerance of " << _rel_tol << " exceeded";
    }
 
    // basic consistency check if something went terribly wrong
    auto check_equality = [&fatal_error](auto mat_or_vec1, auto mat_or_vec2)
    {
        if (mat_or_vec1.size() == 0 || mat_or_vec2.size() == 0)
        {
            return;
        }
        if (mat_or_vec1.rows() != mat_or_vec2.rows() ||
            mat_or_vec1.cols() != mat_or_vec2.cols())
        {
            fatal_error = true;
        }
        else if (((mat_or_vec1 - mat_or_vec2).array().cwiseAbs() >
                  std::numeric_limits<double>::epsilon())
                     .any())
        {
            fatal_error = true;
        }
    };
 
    check_equality(local_M1, local_M2);
    check_equality(local_K1, local_K2);
    check_equality(local_b1, local_b2);
 
    Eigen::VectorXd res1 = Eigen::VectorXd::Zero(num_dof);
    auto const x = MathLib::toVector(local_x);
    auto const x_dot = ((x - MathLib::toVector(local_x_prev)) / dt).eval();
    if (local_M1.size() != 0)
    {
        res1.noalias() += local_M1 * x_dot;
    }
    if (local_K1.size() != 0)
    {
        res1.noalias() += local_K1 * x;
    }
    if (local_b1.size() != 0)
    {
        res1.noalias() -= local_b1;
    }
 
    Eigen::VectorXd res2 = Eigen::VectorXd::Zero(num_dof);
    if (local_M2.size() != 0)
    {
        res2.noalias() += local_M2 * x_dot;
    }
    if (local_K2.size() != 0)
    {
        res2.noalias() += local_K2 * x;
    }
    if (local_b2.size() != 0)
    {
        res2.noalias() -= local_b2;
    }
 
    check_equality(res1, res2);
 
    if (tol_exceeded)
    {
        WARN("Compare Jacobians: {:s}", msg_tolerance.str());
    }
 
    bool const output = tol_exceeded || fatal_error;
 
    if (output)
    {
        _log_file << "\n### counter: " << std::to_string(_counter)
                  << " (begin)\n";
    }
 
    if (fatal_error)
    {
        _log_file << '\n'
                  << "#######################################################\n"
                  << "# FATAL ERROR: " << msg_fatal << '\n'
                  << "#              You cannot expect any meaningful insights "
                     "from the Jacobian data printed below!\n"
                  << "#              The reason for the mentioned differences "
                     "might be\n"
                  << "#              (a) that the assembly routine has side "
                     "effects or\n"
                  << "#              (b) that the assembly routines for M, K "
                     "and b themselves differ.\n"
                  << "#######################################################\n"
                  << '\n';
    }
 
    if (tol_exceeded)
    {
        _log_file << "# " << msg_tolerance.str() << "\n\n";
    }
 
    if (output)
    {
        dump_py(_log_file, "counter", _counter);
        dump_py(_log_file, "num_dof", num_dof);
        dump_py(_log_file, "abs_tol", _abs_tol);
        dump_py(_log_file, "rel_tol", _rel_tol);
 
        _log_file << '\n';
 
        dump_py(_log_file, "local_x", local_x);
        dump_py(_log_file, "local_x_prev", local_x_prev);
        dump_py(_log_file, "dt", dt);
 
        _log_file << '\n';
 
        dump_py(_log_file, "Jacobian_1", local_Jac1);
        dump_py(_log_file, "Jacobian_2", local_Jac2);
 
        _log_file << '\n';
 
        _log_file << "# Jacobian_2 - Jacobian_1\n";
        dump_py(_log_file, "abs_diff", abs_diff);
        _log_file << "# Componentwise: 2 * abs_diff / (|Jacobian_1| + "
                     "|Jacobian_2|)\n";
        dump_py(_log_file, "rel_diff", rel_diff);
 
        _log_file << '\n';
 
        _log_file << "# Masks: 0 ... tolerance met, 1 ... tolerance exceeded\n";
        dump_py(_log_file, "abs_diff_mask", abs_diff_mask);
        dump_py(_log_file, "rel_diff_mask", rel_diff_mask);
 
        _log_file << '\n';
 
        dump_py(_log_file, "M_1", local_M1);
        dump_py(_log_file, "M_2", local_M2);
        if (fatal_error && local_M1.size() == local_M2.size())
        {
            dump_py(_log_file, "delta_M", local_M2 - local_M1);
            _log_file << '\n';
        }
 
        dump_py(_log_file, "K_1", local_K1);
        dump_py(_log_file, "K_2", local_K2);
        if (fatal_error && local_K1.size() == local_K2.size())
        {
            dump_py(_log_file, "delta_K", local_K2 - local_K1);
            _log_file << '\n';
        }
 
        dump_py(_log_file, "b_1", local_b_data);
        dump_py(_log_file, "b_2", local_b_data2);
        if (fatal_error && local_b1.size() == local_b2.size())
        {
            dump_py(_log_file, "delta_b", local_b2 - local_b1);
            _log_file << '\n';
        }
 
        dump_py(_log_file, "res_1", res1);
        dump_py(_log_file, "res_2", res2);
        if (fatal_error)
        {
            dump_py(_log_file, "delta_res", res2 - res1);
        }
 
        _log_file << '\n';
 
        _log_file << "### counter: " << std::to_string(_counter) << " (end)\n";
    }
 
    if (fatal_error)
    {
        _log_file << std::flush;
        OGS_FATAL("{:s}", msg_fatal);
    }
 
    if (tol_exceeded && _fail_on_error)
    {
        _log_file << std::flush;
        OGS_FATAL(
            "OGS failed, because the two Jacobian implementations returned "
            "different results.");
    }
}
 
std::unique_ptr<AbstractJacobianAssembler>
CompareJacobiansJacobianAssembler::copy() const
{
    OGS_FATAL(
        "CompareJacobiansJacobianAssembler should not be copied. This class "
        "logs to a file, which would most certainly break after copying "
        "(concurrent file access) with the current implementation.");
}
 
std::unique_ptr<CompareJacobiansJacobianAssembler>
createCompareJacobiansJacobianAssembler(BaseLib::ConfigTree const& config)
{
    // TODO doc script corner case: Parameter could occur at different
    // locations.
    config.checkConfigParameter("type", "CompareJacobians");
 
    auto asm1 =
        createJacobianAssembler(config.getConfigSubtree("jacobian_assembler"));
 
    auto asm2 = createJacobianAssembler(
        config.getConfigSubtree("reference_jacobian_assembler"));
 
    auto const abs_tol = config.getConfigParameter<double>("abs_tol");
    auto const rel_tol = config.getConfigParameter<double>("rel_tol");
 
    auto const fail_on_error = config.getConfigParameter<bool>("fail_on_error");
 
    auto const log_file = config.getConfigParameter<std::string>("log_file");
 
    return std::make_unique<CompareJacobiansJacobianAssembler>(
        std::move(asm1), std::move(asm2), abs_tol, rel_tol, fail_on_error,
        log_file);
}
}  // namespace ProcessLib