AddLayerToMesh.cpp

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#include "AddLayerToMesh.h"
 
#include <algorithm>
#include <map>
#include <memory>
#include <numeric>
#include <vector>
 
#include "BaseLib/Logging.h"
#include "FlipElements.h"
#include "MeshLib/Elements/Elements.h"
#include "MeshLib/Mesh.h"
#include "MeshLib/Node.h"
#include "MeshLib/Utils/DuplicateMeshComponents.h"
#include "MeshToolsLib/MeshSurfaceExtraction.h"
 
namespace MeshToolsLib
{
MeshLib::Element* extrudeElement(
    std::vector<MeshLib::Node*> const& subsfc_nodes,
    MeshLib::Element const& sfc_elem,
    MeshLib::PropertyVector<std::size_t> const& sfc_to_subsfc_id_map,
    std::map<std::size_t, std::size_t> const& subsfc_sfc_id_map)
{
    if (sfc_elem.getDimension() > 2)
    {
        return nullptr;
    }
 
    const unsigned nElemNodes(sfc_elem.getNumberOfBaseNodes());
    auto new_nodes =
        std::unique_ptr<MeshLib::Node*[]>{new MeshLib::Node*[2 * nElemNodes]};
 
    for (unsigned j = 0; j < nElemNodes; ++j)
    {
        std::size_t const subsfc_id(
            sfc_to_subsfc_id_map[sfc_elem.getNode(j)->getID()]);
        new_nodes[j] = subsfc_nodes[subsfc_id];
        std::size_t new_idx = (nElemNodes == 2) ? (3 - j) : (nElemNodes + j);
        new_nodes[new_idx] = subsfc_nodes[subsfc_sfc_id_map.at(subsfc_id)];
    }
 
    if (sfc_elem.getGeomType() == MeshLib::MeshElemType::LINE)
    {
        return new MeshLib::Quad(new_nodes.release());
    }
    if (sfc_elem.getGeomType() == MeshLib::MeshElemType::TRIANGLE)
    {
        return new MeshLib::Prism(new_nodes.release());
    }
    if (sfc_elem.getGeomType() == MeshLib::MeshElemType::QUAD)
    {
        return new MeshLib::Hex(new_nodes.release());
    }
 
    return nullptr;
}
 
MeshLib::Mesh* addLayerToMesh(MeshLib::Mesh const& mesh, double const thickness,
                              std::string const& name, bool const on_top,
                              bool const copy_material_ids,
                              std::optional<int> const layer_id)
{
    INFO("Extracting top surface of mesh '{:s}' ... ", mesh.getName());
    double const flag = on_top ? -1.0 : 1.0;
    Eigen::Vector3d const dir({0, 0, flag});
    double const angle(90);
    std::unique_ptr<MeshLib::Mesh> sfc_mesh(nullptr);
 
    auto const prop_name =
        MeshLib::getBulkIDString(MeshLib::MeshItemType::Node);
 
    if (mesh.getDimension() == 3)
    {
        sfc_mesh.reset(MeshToolsLib::MeshSurfaceExtraction::getMeshSurface(
            mesh, dir, angle, prop_name));
    }
    else
    {
        sfc_mesh = (on_top) ? std::make_unique<MeshLib::Mesh>(mesh)
                            : std::unique_ptr<MeshLib::Mesh>(
                                  MeshToolsLib::createFlippedMesh(mesh));
        // add property storing node ids
        auto* const pv =
            sfc_mesh->getProperties().createNewPropertyVector<std::size_t>(
                prop_name, MeshLib::MeshItemType::Node, 1);
        if (pv)
        {
            pv->resize(sfc_mesh->getNumberOfNodes());
            std::iota(pv->begin(), pv->end(), 0);
        }
        else
        {
            ERR("Could not create and initialize property '{}'.", prop_name);
            return nullptr;
        }
    }
    INFO("done.");
 
    // *** add new surface nodes
    std::vector<MeshLib::Node*> subsfc_nodes =
        MeshLib::copyNodeVector(mesh.getNodes());
    std::vector<MeshLib::Element*> subsfc_elements =
        MeshLib::copyElementVector(mesh.getElements(), subsfc_nodes);
 
    std::size_t const n_subsfc_nodes(subsfc_nodes.size());
 
    std::vector<MeshLib::Node*> const& sfc_nodes(sfc_mesh->getNodes());
    std::size_t const n_sfc_nodes(sfc_nodes.size());
 
    if (!sfc_mesh->getProperties().existsPropertyVector<std::size_t>(prop_name))
    {
        ERR("Need subsurface node ids, but the property '{:s}' is not "
            "available.",
            prop_name);
        return nullptr;
    }
    // fetch subsurface node ids PropertyVector
    auto const* const node_id_pv =
        sfc_mesh->getProperties().getPropertyVector<std::size_t>(prop_name);
 
    // *** copy sfc nodes to subsfc mesh node
    std::map<std::size_t, std::size_t> subsfc_sfc_id_map;
    for (std::size_t k(0); k < n_sfc_nodes; ++k)
    {
        std::size_t const subsfc_id((*node_id_pv)[k]);
        std::size_t const sfc_id(k + n_subsfc_nodes);
        subsfc_sfc_id_map.insert(std::make_pair(subsfc_id, sfc_id));
        MeshLib::Node const& node(*sfc_nodes[k]);
        subsfc_nodes.push_back(new MeshLib::Node(
            node[0], node[1], node[2] - (flag * thickness), sfc_id));
    }
 
    // *** insert new layer elements into subsfc_mesh
    std::vector<MeshLib::Element*> const& sfc_elements(sfc_mesh->getElements());
    std::size_t const n_sfc_elements(sfc_elements.size());
    for (std::size_t k(0); k < n_sfc_elements; ++k)
    {
        subsfc_elements.push_back(extrudeElement(
            subsfc_nodes, *sfc_elements[k], *node_id_pv, subsfc_sfc_id_map));
    }
 
    auto new_mesh = new MeshLib::Mesh(name, subsfc_nodes, subsfc_elements,
                                      true /* compute_element_neighbors */);
 
    if (!mesh.getProperties().existsPropertyVector<int>("MaterialIDs"))
    {
        ERR("Could not copy the property 'MaterialIDs' since the original mesh "
            "does not contain such a property.");
        return new_mesh;
    }
    auto const* const materials =
        mesh.getProperties().getPropertyVector<int>("MaterialIDs");
 
    auto* const new_materials =
        new_mesh->getProperties().createNewPropertyVector<int>(
            "MaterialIDs", MeshLib::MeshItemType::Cell, 1);
    if (!new_materials)
    {
        ERR("Can not set material properties for new layer");
        return new_mesh;
    }
 
    new_materials->reserve(subsfc_elements.size());
    std::copy(materials->cbegin(), materials->cend(),
              std::back_inserter(*new_materials));
 
    if (copy_material_ids &&
        sfc_mesh->getProperties().existsPropertyVector<int>("MaterialIDs"))
    {
        auto const& sfc_material_ids =
            *sfc_mesh->getProperties().getPropertyVector<int>("MaterialIDs");
        std::copy(sfc_material_ids.cbegin(), sfc_material_ids.cend(),
                  std::back_inserter(*new_materials));
    }
    else
    {
        int const new_layer_id =
            layer_id.has_value()
                ? layer_id.value()
                : *(std::max_element(materials->cbegin(), materials->cend())) +
                      1;
        auto const n_new_props(subsfc_elements.size() -
                               mesh.getNumberOfElements());
        std::fill_n(std::back_inserter(*new_materials), n_new_props,
                    new_layer_id);
    }
 
    return new_mesh;
}
 
}  // namespace MeshToolsLib