VtuInterface.cpp

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// SPDX-FileCopyrightText: Copyright (c) OpenGeoSys Community (opengeosys.org)
// SPDX-License-Identifier: BSD-3-Clause
 
#include "VtuInterface.h"
 
#include <vtkGenericDataObjectReader.h>
#include <vtkNew.h>
#include <vtkXMLUnstructuredGridReader.h>
#include <vtkXMLUnstructuredGridWriter.h>
#if defined(USE_PETSC)
#include <vtkXMLPUnstructuredGridWriter.h>
#endif
#include <vtkSmartPointer.h>
#include <vtkUnstructuredGrid.h>
 
#include <boost/algorithm/string/erase.hpp>
 
#include "BaseLib/DisableFPE.h"
#include "BaseLib/FileTools.h"
#include "BaseLib/Logging.h"
#include "BaseLib/MPI.h"
#include "MeshLib/Mesh.h"
#include "MeshLib/Vtk/VtkMappedMeshSource.h"
#include "VtkMeshConverter.h"
 
namespace MeshLib
{
namespace IO
{
VtuInterface::VtuInterface(MeshLib::Mesh const* const mesh,
                           std::set<std::string> const& output_variable_names,
                           int const dataMode,
                           bool const compress)
    : _mesh(mesh),
      _output_variable_names(output_variable_names),
      _data_mode(dataMode),
      _use_compressor(compress)
{
    if (_data_mode == vtkXMLWriter::Ascii && compress)
    {
        WARN("Ascii data cannot be compressed, ignoring compression flag.");
    }
}
 
vtkSmartPointer<vtkUnstructuredGrid>
VtuInterface::readVtuFileToVtkUnstructuredGrid(std::string const& file_name)
{
    if (!BaseLib::IsFileExisting(file_name))
    {
        ERR("File '{:s}' does not exist.", file_name);
        return nullptr;
    }
 
    vtkSmartPointer<vtkXMLUnstructuredGridReader> reader =
        vtkSmartPointer<vtkXMLUnstructuredGridReader>::New();
    reader->SetFileName(file_name.c_str());
    {
        // Reading the VTU files can trigger floating point exceptions. Because
        // we are not debugging VTK (or other libraries) at this point, the
        // floating point exceptions are temporarily disabled and are restored
        // at the end of the scope.
        [[maybe_unused]] DisableFPE disable_fpe;
        reader->Update();
    }
 
    vtkUnstructuredGrid* vtkGrid = reader->GetOutput();
    if (vtkGrid->GetNumberOfPoints() == 0)
    {
        ERR("Mesh '{:s}' contains zero points.", file_name);
        return nullptr;
    }
    return vtkGrid;
}
 
MeshLib::Mesh* VtuInterface::readVTUFile(std::string const& file_name,
                                         bool const compute_element_neighbors)
{
    vtkSmartPointer<vtkUnstructuredGrid> vtkGrid =
        VtuInterface::readVtuFileToVtkUnstructuredGrid(file_name);
    if (vtkGrid == nullptr)
    {
        return nullptr;
    }
 
    std::string const mesh_name(
        BaseLib::extractBaseNameWithoutExtension(file_name));
    return MeshLib::VtkMeshConverter::convertUnstructuredGrid(
        vtkGrid, compute_element_neighbors, mesh_name);
}
 
MeshLib::Mesh* VtuInterface::readVTKFile(std::string const& file_name,
                                         bool const compute_element_neighbors)
{
    if (!BaseLib::IsFileExisting(file_name))
    {
        ERR("File '{:s}' does not exist.", file_name);
        return nullptr;
    }
 
    vtkSmartPointer<vtkGenericDataObjectReader> reader =
        vtkSmartPointer<vtkGenericDataObjectReader>::New();
    reader->SetFileName(file_name.c_str());
    reader->Update();
 
    // check for unstructured grid
    if (reader->ReadOutputType() != 4)
    {
        ERR("Only VTK-files with dataset type \"Unstructured Grid\" are "
            "currently supported.");
        return nullptr;
    }
 
    reader->ReadAllFieldsOn();
    reader->ReadAllScalarsOn();
    vtkUnstructuredGrid* vtkGrid = reader->GetUnstructuredGridOutput();
    if (vtkGrid->GetNumberOfPoints() == 0)
    {
        ERR("Mesh '{:s}' contains zero points.", file_name);
        return nullptr;
    }
 
    std::string const mesh_name(
        BaseLib::extractBaseNameWithoutExtension(file_name));
    return MeshLib::VtkMeshConverter::convertUnstructuredGrid(
        vtkGrid, compute_element_neighbors, mesh_name);
}
 
#ifdef USE_PETSC
std::string getVtuFileNameForPetscOutputWithoutExtension(
    std::string const& file_name)
{
    auto const file_name_extension = BaseLib::getFileExtension(file_name);
    if (file_name_extension != ".vtu")
    {
        OGS_FATAL("Expected a .vtu file for petsc output.");
    }
 
    auto const file_name_base = boost::erase_last_copy(file_name, ".vtu");
    auto basename = BaseLib::extractBaseName(file_name_base);
 
    // Replace dots to underscores since the pvtu writing function drops all
    // characters starting from a dot.
    std::replace(basename.begin(), basename.end(), '.', '_');
 
    // Restore the dirname if any.
    auto const dirname = BaseLib::extractPath(file_name_base);
    return BaseLib::joinPaths(dirname, basename);
}
#endif
 
bool VtuInterface::writeToFile(std::filesystem::path const& file_path)
{
#ifdef USE_PETSC
    BaseLib::MPI::Mpi mpi;
    if (mpi.size == 1)
    {
        return writeVTU<vtkXMLUnstructuredGridWriter>(file_path.string());
    }
    auto const vtu_file_name =
        getVtuFileNameForPetscOutputWithoutExtension(file_path.string());
    return writeVTU<vtkXMLPUnstructuredGridWriter>(vtu_file_name + ".pvtu",
                                                   mpi.size, mpi.rank);
#endif
    return writeVTU<vtkXMLUnstructuredGridWriter>(file_path.string());
}
 
}  // end namespace IO
}  // end namespace MeshLib