SmallDeformationNonlocalProcess.cpp

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#include "SmallDeformationNonlocalProcess.h"
 
#include <iostream>
#include <nlohmann/json.hpp>
 
#include "ProcessLib/Output/IntegrationPointWriter.h"
 
// Reusing local assembler creation code.
#include "ProcessLib/SmallDeformation/CreateLocalAssemblers.h"
 
namespace ProcessLib
{
namespace SmallDeformationNonlocal
{
template <int DisplacementDim>
SmallDeformationNonlocalProcess<DisplacementDim>::
    SmallDeformationNonlocalProcess(
        std::string name,
        MeshLib::Mesh& mesh,
        std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&&
            jacobian_assembler,
        std::vector<std::unique_ptr<ParameterLib::ParameterBase>> const&
            parameters,
        unsigned const integration_order,
        std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>&&
            process_variables,
        SmallDeformationNonlocalProcessData<DisplacementDim>&& process_data,
        SecondaryVariableCollection&& secondary_variables)
    : Process(std::move(name), mesh, std::move(jacobian_assembler), parameters,
              integration_order, std::move(process_variables),
              std::move(secondary_variables)),
      _process_data(std::move(process_data))
{
    _nodal_forces = MeshLib::getOrCreateMeshProperty<double>(
        mesh, "NodalForces", MeshLib::MeshItemType::Node, DisplacementDim);
 
    _integration_point_writer.emplace_back(
        std::make_unique<IntegrationPointWriter>(
            "sigma_ip",
            static_cast<int>(mesh.getDimension() == 2 ? 4 : 6) /*n components*/,
            integration_order, _local_assemblers,
            &LocalAssemblerInterface::getSigma));
 
    _integration_point_writer.emplace_back(
        std::make_unique<IntegrationPointWriter>(
            "kappa_d_ip", 1 /*n_components*/, integration_order,
            _local_assemblers, &LocalAssemblerInterface::getKappaD));
}
 
template <int DisplacementDim>
bool SmallDeformationNonlocalProcess<DisplacementDim>::isLinear() const
{
    return false;
}
 
template <int DisplacementDim>
void SmallDeformationNonlocalProcess<DisplacementDim>::
    initializeConcreteProcess(NumLib::LocalToGlobalIndexMap const& dof_table,
                              MeshLib::Mesh const& mesh,
                              unsigned const integration_order)
{
    // Reusing local assembler creation code.
    ProcessLib::SmallDeformation::createLocalAssemblers<
        DisplacementDim, SmallDeformationNonlocalLocalAssembler>(
        mesh.getElements(), dof_table, _local_assemblers,
        mesh.isAxiallySymmetric(), integration_order, _process_data);
 
    // TODO move the two data members somewhere else.
    // for extrapolation of secondary variables
    std::vector<MeshLib::MeshSubset> all_mesh_subsets_single_component{
        *_mesh_subset_all_nodes};
    _local_to_global_index_map_single_component =
        std::make_unique<NumLib::LocalToGlobalIndexMap>(
            std::move(all_mesh_subsets_single_component),
            // by location order is needed for output
            NumLib::ComponentOrder::BY_LOCATION);
 
    Process::_secondary_variables.addSecondaryVariable(
        "sigma",
        makeExtrapolator(MathLib::KelvinVector::KelvinVectorType<
                             DisplacementDim>::RowsAtCompileTime,
                         getExtrapolator(), _local_assemblers,
                         &LocalAssemblerInterface::getIntPtSigma));
 
    Process::_secondary_variables.addSecondaryVariable(
        "epsilon",
        makeExtrapolator(MathLib::KelvinVector::KelvinVectorType<
                             DisplacementDim>::RowsAtCompileTime,
                         getExtrapolator(), _local_assemblers,
                         &LocalAssemblerInterface::getIntPtEpsilon));
 
    Process::_secondary_variables.addSecondaryVariable(
        "eps_p_V",
        makeExtrapolator(1, getExtrapolator(), _local_assemblers,
                         &LocalAssemblerInterface::getIntPtEpsPV));
    Process::_secondary_variables.addSecondaryVariable(
        "eps_p_D_xx",
        makeExtrapolator(1, getExtrapolator(), _local_assemblers,
                         &LocalAssemblerInterface::getIntPtEpsPDXX));
 
    Process::_secondary_variables.addSecondaryVariable(
        "damage",
        makeExtrapolator(1, getExtrapolator(), _local_assemblers,
                         &LocalAssemblerInterface::getIntPtDamage));
 
    GlobalExecutor::executeMemberOnDereferenced(
        &LocalAssemblerInterface::nonlocal, _local_assemblers,
        _local_assemblers);
 
    // Set initial conditions for integration point data.
    for (auto const& ip_writer : _integration_point_writer)
    {
        auto const& name = ip_writer->name();
        // First check the field data, which is used for restart.
        if (mesh.getProperties().existsPropertyVector<double>(name))
        {
            auto const& mesh_property =
                *mesh.getProperties().template getPropertyVector<double>(name);
 
            // The mesh property must be defined on integration points.
            if (mesh_property.getMeshItemType() !=
                MeshLib::MeshItemType::IntegrationPoint)
            {
                continue;
            }
 
            auto const ip_meta_data = getIntegrationPointMetaData(mesh, name);
 
            // Check the number of components.
            if (ip_meta_data.n_components !=
                mesh_property.getNumberOfGlobalComponents())
            {
                OGS_FATAL(
                    "Different number of components in meta data ({:d}) than "
                    "in the integration point field data for '{:s}': {:d}.",
                    ip_meta_data.n_components, name,
                    mesh_property.getNumberOfGlobalComponents());
            }
 
            // Now we have a properly named vtk's field data array and the
            // corresponding meta data.
            std::size_t position = 0;
            for (auto& local_asm : _local_assemblers)
            {
                std::size_t const integration_points_read =
                    local_asm->setIPDataInitialConditions(
                        name, &mesh_property[position],
                        ip_meta_data.integration_order);
                if (integration_points_read == 0)
                {
                    OGS_FATAL(
                        "No integration points read in the integration point "
                        "initial conditions set function.");
                }
                position += integration_points_read * ip_meta_data.n_components;
            }
        }
        else if (mesh.getProperties().existsPropertyVector<double>(name +
                                                                   "_ic"))
        {  // Try to find cell data with '_ic' suffix
            auto const& mesh_property =
                *mesh.getProperties().template getPropertyVector<double>(name +
                                                                         "_ic");
            if (mesh_property.getMeshItemType() != MeshLib::MeshItemType::Cell)
            {
                continue;
            }
 
            // Now we have a vtk's cell data array containing the initial
            // conditions for the corresponding integration point writer.
 
            // For each assembler use the single cell value for all
            // integration points.
            for (std::size_t i = 0; i < _local_assemblers.size(); ++i)
            {
                auto& local_asm = _local_assemblers[i];
 
                std::vector<double> value(
                    &mesh_property[i],
                    &mesh_property[i] +
                        mesh_property.getNumberOfGlobalComponents());
                // TODO (naumov) Check sizes / read size / etc.
                // OR reconstruct dimensions from size / component =
                // ip_points
                local_asm->setIPDataInitialConditionsFromCellData(name, value);
            }
        }
    }
 
    // Initialize local assemblers after all variables have been set.
    GlobalExecutor::executeMemberOnDereferenced(
        &LocalAssemblerInterface::initialize, _local_assemblers,
        *_local_to_global_index_map);
}
 
template <int DisplacementDim>
void SmallDeformationNonlocalProcess<DisplacementDim>::assembleConcreteProcess(
    const double t, double const dt, std::vector<GlobalVector*> const& x,
    std::vector<GlobalVector*> const& xdot, int const process_id,
    GlobalMatrix& M, GlobalMatrix& K, GlobalVector& b)
{
    DBUG("Assemble SmallDeformationNonlocalProcess.");
 
    std::vector<std::reference_wrapper<NumLib::LocalToGlobalIndexMap>>
        dof_table = {std::ref(*_local_to_global_index_map)};
 
    ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
 
    // Call global assembler for each local assembly item.
    GlobalExecutor::executeSelectedMemberDereferenced(
        _global_assembler, &VectorMatrixAssembler::assemble, _local_assemblers,
        pv.getActiveElementIDs(), dof_table, t, dt, x, xdot, process_id, M, K,
        b);
}
 
template <int DisplacementDim>
void SmallDeformationNonlocalProcess<
    DisplacementDim>::preAssembleConcreteProcess(const double t,
                                                 double const dt,
                                                 GlobalVector const& x)
{
    DBUG("preAssemble SmallDeformationNonlocalProcess.");
 
    const int process_id = 0;
    ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
 
    // Call global assembler for each local assembly item.
    GlobalExecutor::executeSelectedMemberDereferenced(
        _global_assembler, &VectorMatrixAssembler::preAssemble,
        _local_assemblers, pv.getActiveElementIDs(),
        *_local_to_global_index_map, t, dt, x);
}
 
template <int DisplacementDim>
void SmallDeformationNonlocalProcess<DisplacementDim>::
    assembleWithJacobianConcreteProcess(
        const double t, double const dt, std::vector<GlobalVector*> const& x,
        std::vector<GlobalVector*> const& xdot, const double dxdot_dx,
        const double dx_dx, int const process_id, GlobalMatrix& M,
        GlobalMatrix& K, GlobalVector& b, GlobalMatrix& Jac)
{
    DBUG("AssembleWithJacobian SmallDeformationNonlocalProcess.");
 
    std::vector<std::reference_wrapper<NumLib::LocalToGlobalIndexMap>>
        dof_table = {std::ref(*_local_to_global_index_map)};
 
    ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
 
    // Call global assembler for each local assembly item.
    GlobalExecutor::executeSelectedMemberDereferenced(
        _global_assembler, &VectorMatrixAssembler::assembleWithJacobian,
        _local_assemblers, pv.getActiveElementIDs(), dof_table, t, dt, x, xdot,
        dxdot_dx, dx_dx, process_id, M, K, b, Jac);
 
    b.copyValues(*_nodal_forces);
    std::transform(_nodal_forces->begin(), _nodal_forces->end(),
                   _nodal_forces->begin(), [](double val) { return -val; });
}
 
template <int DisplacementDim>
void SmallDeformationNonlocalProcess<DisplacementDim>::
    postTimestepConcreteProcess(std::vector<GlobalVector*> const& x,
                                double const t,
                                double const dt,
                                int const process_id)
{
    DBUG("PostTimestep SmallDeformationNonlocalProcess.");
    std::vector<NumLib::LocalToGlobalIndexMap const*> dof_tables;
    dof_tables.reserve(x.size());
    std::generate_n(std::back_inserter(dof_tables), x.size(),
                    [&]() { return _local_to_global_index_map.get(); });
 
    ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
    GlobalExecutor::executeSelectedMemberOnDereferenced(
        &LocalAssemblerInterface::postTimestep, _local_assemblers,
        pv.getActiveElementIDs(), dof_tables, x, t, dt);
}
 
template <int DisplacementDim>
NumLib::IterationResult
SmallDeformationNonlocalProcess<DisplacementDim>::postIterationConcreteProcess(
    GlobalVector const& x)
{
    _process_data.crack_volume_old = _process_data.crack_volume;
    _process_data.crack_volume = 0.0;
 
    DBUG("PostNonLinearSolver crack volume computation.");
 
    const int process_id = 0;
    ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
 
    GlobalExecutor::executeSelectedMemberOnDereferenced(
        &LocalAssemblerInterface::computeCrackIntegral, _local_assemblers,
        pv.getActiveElementIDs(), *_local_to_global_index_map, x,
        _process_data.crack_volume);
 
    INFO("Integral of crack: {:g}", _process_data.crack_volume);
 
    return NumLib::IterationResult::SUCCESS;
}
 
template class SmallDeformationNonlocalProcess<2>;
template class SmallDeformationNonlocalProcess<3>;
 
}  // namespace SmallDeformationNonlocal
}  // namespace ProcessLib