Detailed Description

template<int DisplacementDim>
class ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >

Definition at line 19 of file LIE/HydroMechanics/HydroMechanicsProcess.h.

#include <HydroMechanicsProcess.h>

Inheritance diagram for ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >:

Collaboration diagram for ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >:

Public Member Functions
	HydroMechanicsProcess (std::string name, MeshLib::Mesh &mesh, std::unique_ptr< ProcessLib::AbstractJacobianAssembler > &&jacobian_assembler, std::vector< std::unique_ptr< ParameterLib::ParameterBase > > const &parameters, unsigned const integration_order, std::vector< std::vector< std::reference_wrapper< ProcessVariable > > > &&process_variables, HydroMechanicsProcessData< DisplacementDim > &&process_data, SecondaryVariableCollection &&secondary_variables, bool const use_monolithic_scheme)
void	postTimestepConcreteProcess (std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, double const t, double const dt, int const process_id) override
ODESystem interface
bool	isLinear () const override
Public Member Functions inherited from ProcessLib::Process
	Process (std::string name_, MeshLib::Mesh &mesh, std::unique_ptr< AbstractJacobianAssembler > &&jacobian_assembler, std::vector< std::unique_ptr< ParameterLib::ParameterBase > > const &parameters, unsigned const integration_order, std::vector< std::vector< std::reference_wrapper< ProcessVariable > > > &&process_variables, SecondaryVariableCollection &&secondary_variables, const bool use_monolithic_scheme=true)
void	preTimestep (std::vector< GlobalVector * > const &x, const double t, const double delta_t, const int process_id)
	Preprocessing before starting assembly for new timestep.
void	postTimestep (std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, const double t, const double delta_t, int const process_id)
	Postprocessing after a complete timestep.
void	postNonLinearSolver (std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, const double t, double const dt, int const process_id)
void	preIteration (const unsigned iter, GlobalVector const &x) final
void	computeSecondaryVariable (double const t, double const dt, std::vector< GlobalVector * > const &x, GlobalVector const &x_prev, int const process_id)
	compute secondary variables for the coupled equations or for output.
NumLib::IterationResult	postIteration (GlobalVector const &x) final
void	initialize (std::map< int, std::shared_ptr< MaterialPropertyLib::Medium > > const &media)
void	setInitialConditions (std::vector< GlobalVector * > &process_solutions, std::vector< GlobalVector * > const &process_solutions_prev, double const t, int const process_id)
MathLib::MatrixSpecifications	getMatrixSpecifications (const int process_id) const override
void	updateDeactivatedSubdomains (double const time, const int process_id)
virtual bool	isMonolithicSchemeUsed () const
virtual void	extrapolateIntegrationPointValuesToNodes (const double, std::vector< GlobalVector * > const &, std::vector< GlobalVector * > &)
void	preAssemble (const double t, double const dt, GlobalVector const &x) final
void	assemble (const double t, double const dt, std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, int const process_id, GlobalMatrix &M, GlobalMatrix &K, GlobalVector &b) final
void	assembleWithJacobian (const double t, double const dt, std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, int const process_id, GlobalVector &b, GlobalMatrix &Jac) final
void	preOutput (const double t, double const dt, std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, int const process_id)
std::vector< NumLib::IndexValueVector< GlobalIndexType > > const *	getKnownSolutions (double const t, GlobalVector const &x, int const process_id) const final
virtual NumLib::LocalToGlobalIndexMap const &	getDOFTable (const int) const
MeshLib::Mesh &	getMesh () const
std::vector< std::vector< std::reference_wrapper< ProcessVariable > > > const &	getProcessVariables () const
std::vector< std::reference_wrapper< ProcessVariable > > const &	getProcessVariables (const int process_id) const
std::vector< std::size_t > const &	getActiveElementIDs () const
SecondaryVariableCollection const &	getSecondaryVariables () const
std::vector< std::unique_ptr< MeshLib::IntegrationPointWriter > > const &	getIntegrationPointWriters () const
virtual Eigen::Vector3d	getFlux (std::size_t, MathLib::Point3d const &, double const, std::vector< GlobalVector * > const &) const
virtual void	solveReactionEquation (std::vector< GlobalVector * > &, std::vector< GlobalVector * > const &, double const, double const, NumLib::EquationSystem &, int const)
bool	requiresNormalization () const override
Public Member Functions inherited from ProcessLib::SubmeshAssemblySupport
virtual std::vector< std::vector< std::string > >	initializeAssemblyOnSubmeshes (std::vector< std::reference_wrapper< MeshLib::Mesh > > const &meshes)
virtual	~SubmeshAssemblySupport ()=default

Private Types
using	LocalAssemblerInterface = HydroMechanicsLocalAssemblerInterface

Private Member Functions
void	constructDofTable () override
void	initializeConcreteProcess (NumLib::LocalToGlobalIndexMap const &dof_table, MeshLib::Mesh const &mesh, unsigned const integration_order) override
	Process specific initialization called by initialize().
void	assembleConcreteProcess (const double t, double const dt, std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, int const process_id, GlobalMatrix &M, GlobalMatrix &K, GlobalVector &b) override
void	assembleWithJacobianConcreteProcess (const double t, double const dt, std::vector< GlobalVector * > const &x, std::vector< GlobalVector * > const &x_prev, int const process_id, GlobalVector &b, GlobalMatrix &Jac) override
void	preTimestepConcreteProcess (std::vector< GlobalVector * > const &x, double const t, double const dt, int const process_id) override
void	updateElementLevelSets (MeshLib::Element const &e, MeshLib::Mesh &mesh)

Private Attributes
HydroMechanicsProcessData< DisplacementDim >	_process_data
std::vector< std::unique_ptr< LocalAssemblerInterface > >	_local_assemblers
std::vector< MeshLib::Element * >	_vec_matrix_elements
std::vector< int >	_vec_fracture_mat_IDs
std::vector< std::vector< MeshLib::Element * > >	_vec_fracture_elements
std::vector< std::vector< MeshLib::Element * > >	_vec_fracture_matrix_elements
std::vector< std::vector< MeshLib::Node * > >	_vec_fracture_nodes
std::vector< MeshLib::Node * >	_vec_junction_nodes
std::vector< std::vector< MeshLib::Element * > >	_vec_junction_fracture_matrix_elements
std::vector< std::unique_ptr< MeshLib::MeshSubset const > >	_mesh_subset_fracture_nodes
std::unique_ptr< MeshLib::MeshSubset const >	_mesh_subset_junction_nodes
std::unique_ptr< MeshLib::MeshSubset const >	_mesh_subset_matrix_nodes
std::vector< MeshLib::Node * >	_mesh_nodes_p
std::unique_ptr< MeshLib::MeshSubset const >	_mesh_subset_nodes_p

Additional Inherited Members
Public Attributes inherited from ProcessLib::Process
std::string const	name
Static Public Attributes inherited from ProcessLib::Process
static PROCESSLIB_EXPORT const std::string	constant_one_parameter_name = "constant_one"
Protected Member Functions inherited from ProcessLib::Process
std::vector< NumLib::LocalToGlobalIndexMap const * >	getDOFTables (int const number_of_processes) const
NumLib::Extrapolator &	getExtrapolator () const
NumLib::LocalToGlobalIndexMap const &	getSingleComponentDOFTable () const
void	initializeProcessBoundaryConditionsAndSourceTerms (const NumLib::LocalToGlobalIndexMap &dof_table, const int process_id, std::map< int, std::shared_ptr< MaterialPropertyLib::Medium > > const &media)
void	constructMonolithicProcessDofTable ()
void	constructDofTableOfSpecifiedProcessStaggeredScheme (const int specified_process_id)
virtual std::tuple< NumLib::LocalToGlobalIndexMap *, bool >	getDOFTableForExtrapolatorData () const
std::vector< GlobalIndexType >	getIndicesOfResiduumWithoutInitialCompensation () const override
void	setReleaseNodalForces (GlobalVector const *r_neq, int const process_id) override
Protected Attributes inherited from ProcessLib::Process
MeshLib::Mesh &	_mesh
std::unique_ptr< MeshLib::MeshSubset const >	_mesh_subset_all_nodes
std::unique_ptr< NumLib::LocalToGlobalIndexMap >	_local_to_global_index_map
SecondaryVariableCollection	_secondary_variables
CellAverageData	cell_average_data_
std::unique_ptr< ProcessLib::AbstractJacobianAssembler >	_jacobian_assembler
VectorMatrixAssembler	_global_assembler
const bool	_use_monolithic_scheme
unsigned const	_integration_order
std::vector< std::unique_ptr< MeshLib::IntegrationPointWriter > >	_integration_point_writer
GlobalSparsityPattern	_sparsity_pattern
std::vector< std::vector< std::reference_wrapper< ProcessVariable > > >	_process_variables
std::vector< BoundaryConditionCollection >	_boundary_conditions

Member Typedef Documentation

◆ LocalAssemblerInterface

template<int DisplacementDim>

using ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::LocalAssemblerInterface = HydroMechanicsLocalAssemblerInterface

private

Definition at line 51 of file LIE/HydroMechanics/HydroMechanicsProcess.h.

Constructor & Destructor Documentation

◆ HydroMechanicsProcess()

template<int DisplacementDim>

ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::HydroMechanicsProcess	(	std::string	name,
		MeshLib::Mesh &	mesh,
		std::unique_ptr< ProcessLib::AbstractJacobianAssembler > &&	jacobian_assembler,
		std::vector< std::unique_ptr< ParameterLib::ParameterBase > > const &	parameters,
		unsigned const	integration_order,
		std::vector< std::vector< std::reference_wrapper< ProcessVariable > > > &&	process_variables,
		HydroMechanicsProcessData< DisplacementDim > &&	process_data,
		SecondaryVariableCollection &&	secondary_variables,
		bool const	use_monolithic_scheme )

Definition at line 33 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

    : Process(std::move(name), mesh, std::move(jacobian_assembler), parameters,
              integration_order, std::move(process_variables),
              std::move(secondary_variables), use_monolithic_scheme),
      _process_data(std::move(process_data))
{
    // For numerical Jacobian assembler
    if (this->_jacobian_assembler->isPerturbationEnabled())
    {
        OGS_FATAL(
            "The numericial Jacobian assembler is not supported for the "
            "LIE HydroMechanics process.");
    }
 
    INFO("[LIE/HM] looking for fracture elements in the given mesh");
    std::vector<std::pair<std::size_t, std::vector<int>>>
        vec_branch_nodeID_matIDs;
    std::vector<std::pair<std::size_t, std::vector<int>>>
        vec_junction_nodeID_matIDs;
    getFractureMatrixDataInMesh(mesh, _vec_matrix_elements,
                                _vec_fracture_mat_IDs, _vec_fracture_elements,
                                _vec_fracture_matrix_elements,
                                _vec_fracture_nodes, vec_branch_nodeID_matIDs,
                                vec_junction_nodeID_matIDs);
 
    if (_vec_fracture_mat_IDs.size() !=
        _process_data.fracture_properties.size())
    {
        OGS_FATAL(
            "The number of the given fracture properties ({:d}) are not "
            "consistent with the number of fracture groups in a mesh ({:d}).",
            _process_data.fracture_properties.size(),
            _vec_fracture_mat_IDs.size());
    }
 
    // create a map from a material ID to a fracture ID
    auto max_frac_mat_id = std::max_element(_vec_fracture_mat_IDs.begin(),
                                            _vec_fracture_mat_IDs.end());
    _process_data.map_materialID_to_fractureID.resize(*max_frac_mat_id + 1);
    for (unsigned i = 0; i < _vec_fracture_mat_IDs.size(); i++)
    {
        _process_data.map_materialID_to_fractureID[_vec_fracture_mat_IDs[i]] =
            i;
    }
 
    // create a table of connected fracture IDs for each element
    _process_data.vec_ele_connected_fractureIDs.resize(
        mesh.getNumberOfElements());
    for (unsigned i = 0; i < _vec_fracture_matrix_elements.size(); i++)
    {
        for (auto e : _vec_fracture_matrix_elements[i])
        {
            _process_data.vec_ele_connected_fractureIDs[e->getID()].push_back(
                i);
        }
    }
 
    // set fracture property
    for (auto& fracture_prop : _process_data.fracture_properties)
    {
        // based on the 1st element assuming a fracture forms a straight line
        setFractureProperty(
            DisplacementDim,
            *_vec_fracture_elements[fracture_prop.fracture_id][0],
            fracture_prop);
    }
 
    // set branches
    for (auto const& [vec_branch_nodeID, matID] : vec_branch_nodeID_matIDs)
    {
        auto const master_matId = matID[0];
        auto const slave_matId = matID[1];
        auto& master_frac =
            _process_data.fracture_properties
                [_process_data.map_materialID_to_fractureID[master_matId]];
        auto& slave_frac =
            _process_data.fracture_properties
                [_process_data.map_materialID_to_fractureID[slave_matId]];
 
        master_frac.branches_master.push_back(createBranchProperty(
            *mesh.getNode(vec_branch_nodeID), master_frac, slave_frac));
 
        slave_frac.branches_slave.push_back(createBranchProperty(
            *mesh.getNode(vec_branch_nodeID), master_frac, slave_frac));
    }
 
    // set junctions
    transform(cbegin(vec_junction_nodeID_matIDs),
              cend(vec_junction_nodeID_matIDs),
              back_inserter(_vec_junction_nodes),
              [&](auto& vec_junction_nodeID_matID)
              {
                  return const_cast<MeshLib::Node*>(
                      _mesh.getNode(vec_junction_nodeID_matID.first));
              });
 
    for (std::size_t i = 0; i < vec_junction_nodeID_matIDs.size(); i++)
    {
        auto const& material_ids = vec_junction_nodeID_matIDs[i].second;
        assert(material_ids.size() == 2);
        std::array<int, 2> fracture_ids{
            {_process_data.map_materialID_to_fractureID[material_ids[0]],
             _process_data.map_materialID_to_fractureID[material_ids[1]]}};
 
        _process_data.junction_properties.emplace_back(
            i, *mesh.getNode(vec_junction_nodeID_matIDs[i].first),
            fracture_ids);
    }
 
    // create a table of connected junction IDs for each element
    _process_data.vec_ele_connected_junctionIDs.resize(
        mesh.getNumberOfElements());
    for (unsigned i = 0; i < vec_junction_nodeID_matIDs.size(); i++)
    {
        auto node = mesh.getNode(vec_junction_nodeID_matIDs[i].first);
        for (auto id :
             mesh.getElementsConnectedToNode(*node) | MeshLib::views::ids)
        {
            _process_data.vec_ele_connected_junctionIDs[id].push_back(i);
        }
    }
 
    // create a table of junction node and connected elements
    _vec_junction_fracture_matrix_elements.resize(
        vec_junction_nodeID_matIDs.size());
    for (unsigned i = 0; i < vec_junction_nodeID_matIDs.size(); i++)
    {
        auto node = mesh.getNode(vec_junction_nodeID_matIDs[i].first);
        for (auto e : mesh.getElementsConnectedToNode(*node))
        {
            _vec_junction_fracture_matrix_elements[i].push_back(
                const_cast<MeshLib::Element*>(e));
        }
    }
 
    //
    // If Neumann BCs for the displacement_jump variable are required they need
    // special treatment because of the levelset function. The implementation
    // exists in the version 6.1.0 (e54815cc07ee89c81f953a4955b1c788595dd725)
    // and was removed due to lack of applications.
    //
 
    if (!_process_data.deactivate_matrix_in_flow)
    {
        _process_data.p_element_status =
            std::make_unique<MeshLib::ElementStatus>(&mesh);
    }
    else
    {
        auto const range =
            MeshToolsLib::MeshInformation::getValueBounds(*materialIDs(mesh));
        if (!range)
        {
            OGS_FATAL(
                "Could not get minimum/maximum ranges values for the "
                "MaterialIDs property in the mesh '{:s}'.",
                mesh.getName());
        }
 
        std::vector<int> vec_p_inactive_matIDs;
        for (int matID = range->first; matID <= range->second; matID++)
        {
            if (std::find(_vec_fracture_mat_IDs.begin(),
                          _vec_fracture_mat_IDs.end(),
                          matID) == _vec_fracture_mat_IDs.end())
            {
                vec_p_inactive_matIDs.push_back(matID);
            }
        }
        _process_data.p_element_status =
            std::make_unique<MeshLib::ElementStatus>(&mesh,
                                                     vec_p_inactive_matIDs);
 
        const int monolithic_process_id = 0;
        ProcessVariable const& pv_p =
            getProcessVariables(monolithic_process_id)[0];
        _process_data.p0 = &pv_p.getInitialCondition();
    }
    MeshLib::PropertyVector<int> const* material_ids(
        mesh.getProperties().getPropertyVector<int>("MaterialIDs"));
    _process_data.mesh_prop_materialIDs = material_ids;
}

References ProcessLib::Process::Process(), ProcessLib::Process::_jacobian_assembler, ProcessLib::Process::_mesh, _process_data, _vec_fracture_elements, _vec_fracture_mat_IDs, _vec_fracture_matrix_elements, _vec_fracture_nodes, _vec_junction_fracture_matrix_elements, _vec_junction_nodes, _vec_matrix_elements, ProcessLib::LIE::createBranchProperty(), MeshLib::Mesh::getElementsConnectedToNode(), ProcessLib::LIE::getFractureMatrixDataInMesh(), ProcessLib::ProcessVariable::getInitialCondition(), MeshLib::Mesh::getName(), MeshLib::Mesh::getNode(), MeshLib::Mesh::getNumberOfElements(), ProcessLib::Process::getProcessVariables(), MeshLib::Mesh::getProperties(), MeshLib::Properties::getPropertyVector(), MeshToolsLib::MeshInformation::getValueBounds(), MeshLib::views::ids, INFO(), ProcessLib::Process::name, OGS_FATAL, and ProcessLib::LIE::setFractureProperty().

Member Function Documentation

◆ assembleConcreteProcess()

template<int DisplacementDim>

void ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::assembleConcreteProcess	(	const double	t,
		double const	dt,
		std::vector< GlobalVector * > const &	x,
		std::vector< GlobalVector * > const &	x_prev,
		int const	process_id,
		GlobalMatrix &	M,
		GlobalMatrix &	K,
		GlobalVector &	b )

overrideprivatevirtual

Implements ProcessLib::Process.

Definition at line 590 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    DBUG("Assemble HydroMechanicsProcess.");
 
    std::vector<NumLib::LocalToGlobalIndexMap const*> dof_table = {
        _local_to_global_index_map.get()};
    // Call global assembler for each local assembly item.
    GlobalExecutor::executeMemberDereferenced(
        _global_assembler, &VectorMatrixAssembler::assemble, _local_assemblers,
        dof_table, t, dt, x, x_prev, process_id, &M, &K, &b);
}

References ProcessLib::Process::_global_assembler, _local_assemblers, ProcessLib::Process::_local_to_global_index_map, ProcessLib::VectorMatrixAssembler::assemble(), DBUG(), and NumLib::SerialExecutor::executeMemberDereferenced().

◆ assembleWithJacobianConcreteProcess()

template<int DisplacementDim>

void ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::assembleWithJacobianConcreteProcess	(	const double	t,
		double const	dt,
		std::vector< GlobalVector * > const &	x,
		std::vector< GlobalVector * > const &	x_prev,
		int const	process_id,
		GlobalVector &	b,
		GlobalMatrix &	Jac )

overrideprivatevirtual

Implements ProcessLib::Process.

Definition at line 606 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    DBUG("AssembleWithJacobian HydroMechanicsProcess.");
 
    // Call global assembler for each local assembly item.
    std::vector<NumLib::LocalToGlobalIndexMap const*> dof_table = {
        _local_to_global_index_map.get()};
    GlobalExecutor::executeSelectedMemberDereferenced(
        _global_assembler, &VectorMatrixAssembler::assembleWithJacobian,
        _local_assemblers, getActiveElementIDs(), dof_table, t, dt, x, x_prev,
        process_id, &b, &Jac);
 
    auto copyRhs = [&](int const variable_id, auto& output_vector)
    {
        transformVariableFromGlobalVector(b, variable_id,
                                          *_local_to_global_index_map,
                                          output_vector, std::negate<double>());
    };
    copyRhs(0, *_process_data.mesh_prop_hydraulic_flow);
    copyRhs(1, *_process_data.mesh_prop_nodal_forces);
    copyRhs(2, *_process_data.mesh_prop_nodal_forces_jump);
}

References ProcessLib::Process::_global_assembler, _local_assemblers, ProcessLib::Process::_local_to_global_index_map, _process_data, ProcessLib::VectorMatrixAssembler::assembleWithJacobian(), DBUG(), NumLib::SerialExecutor::executeSelectedMemberDereferenced(), and ProcessLib::Process::getActiveElementIDs().

◆ constructDofTable()

template<int DisplacementDim>

void ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::constructDofTable ( )

overrideprivatevirtual

This function is for general cases, in which all equations of the coupled processes have the same number of unknowns. For the general cases with the staggered scheme, all equations of the coupled processes share one DOF table hold by _local_to_global_index_map. Other cases can be considered by overloading this member function in the derived class.

Reimplemented from ProcessLib::Process.

Definition at line 227 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    //------------------------------------------------------------
    // prepare mesh subsets to define DoFs
    //------------------------------------------------------------
    // for extrapolation
    _mesh_subset_all_nodes =
        std::make_unique<MeshLib::MeshSubset>(_mesh, _mesh.getNodes());
    // pressure
    _mesh_nodes_p = MeshLib::getBaseNodes(
        _process_data.p_element_status->getActiveElements());
    _mesh_subset_nodes_p =
        std::make_unique<MeshLib::MeshSubset>(_mesh, _mesh_nodes_p);
    // regular u
    _mesh_subset_matrix_nodes =
        std::make_unique<MeshLib::MeshSubset>(_mesh, _mesh.getNodes());
    // u jump
    for (unsigned i = 0; i < _vec_fracture_nodes.size(); i++)
    {
        _mesh_subset_fracture_nodes.push_back(
            std::make_unique<MeshLib::MeshSubset const>(
                _mesh, _vec_fracture_nodes[i]));
    }
    // enrichment for junctions
    _mesh_subset_junction_nodes =
        std::make_unique<MeshLib::MeshSubset>(_mesh, _vec_junction_nodes);
 
    // Collect the mesh subsets in a vector. (pressure, displacement,
    // displacement_jump_fracture, and displacement_jump_junction)
    std::vector<MeshLib::MeshSubset> all_mesh_subsets;
    all_mesh_subsets.emplace_back(*_mesh_subset_nodes_p);
    std::generate_n(std::back_inserter(all_mesh_subsets), DisplacementDim,
                    [&]() { return *_mesh_subset_matrix_nodes; });
    for (auto const& ms : _mesh_subset_fracture_nodes)
    {
        std::generate_n(std::back_inserter(all_mesh_subsets),
                        DisplacementDim,
                        [&]() { return *ms; });
    }
    std::generate_n(std::back_inserter(all_mesh_subsets),
                    DisplacementDim,
                    [&]() { return *_mesh_subset_junction_nodes; });
 
    // The corresponding number of components for (pressure, displacement,
    // displacement_jump_fracture, and displacement_jump_junction).
    std::vector<int> vec_n_components;
    vec_n_components.push_back(1);  // pressure
    vec_n_components.insert(
        vec_n_components.end(),
        1 + _vec_fracture_mat_IDs.size() + _vec_junction_nodes.size(),
        DisplacementDim);  // all displacements
 
    auto const all_fracture_matrix_elements = _vec_fracture_matrix_elements |
                                              ranges::views::join |
                                              ranges::to<std::vector>();
    std::vector<std::vector<MeshLib::Element*> const*> vec_var_elements;
    if (!_process_data.deactivate_matrix_in_flow)
    {
        vec_var_elements.push_back(&_mesh.getElements());
    }
    else
    {
        // TODO set elements including active nodes for pressure.
        // cannot use ElementStatus
        vec_var_elements.push_back(&all_fracture_matrix_elements);
    }
    vec_var_elements.push_back(&_vec_matrix_elements);
    for (unsigned i = 0; i < _vec_fracture_matrix_elements.size(); i++)
    {
        vec_var_elements.push_back(&_vec_fracture_matrix_elements[i]);
    }
    for (unsigned i = 0; i < _vec_junction_fracture_matrix_elements.size(); i++)
    {
        vec_var_elements.push_back(&_vec_junction_fracture_matrix_elements[i]);
    }
 
    INFO("[LIE/HM] creating a DoF table");
    _local_to_global_index_map =
        std::make_unique<NumLib::LocalToGlobalIndexMap>(
            std::move(all_mesh_subsets),
            vec_n_components,
            vec_var_elements,
            NumLib::ComponentOrder::BY_COMPONENT);
 
    DBUG("[LIE/HM] created {:d} DoF", _local_to_global_index_map->size());
}

References ProcessLib::Process::_local_to_global_index_map, ProcessLib::Process::_mesh, _mesh_nodes_p, ProcessLib::Process::_mesh_subset_all_nodes, _mesh_subset_fracture_nodes, _mesh_subset_junction_nodes, _mesh_subset_matrix_nodes, _mesh_subset_nodes_p, _process_data, _vec_fracture_mat_IDs, _vec_fracture_matrix_elements, _vec_fracture_nodes, _vec_junction_fracture_matrix_elements, _vec_junction_nodes, _vec_matrix_elements, NumLib::BY_COMPONENT, DBUG(), MeshLib::getBaseNodes(), and INFO().

◆ initializeConcreteProcess()

template<int DisplacementDim>

void ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::initializeConcreteProcess	(	NumLib::LocalToGlobalIndexMap const &	dof_table,
		MeshLib::Mesh const &	mesh,
		unsigned const	integration_order )

overrideprivatevirtual

Process specific initialization called by initialize().

Implements ProcessLib::Process.

Definition at line 363 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    assert(mesh.getDimension() == DisplacementDim);
    INFO("[LIE/HM] creating local assemblers");
    ProcessLib::LIE::HydroMechanics::createLocalAssemblers<
        DisplacementDim, HydroMechanicsLocalAssemblerMatrix,
        HydroMechanicsLocalAssemblerMatrixNearFracture,
        HydroMechanicsLocalAssemblerFracture>(
        mesh.getElements(), dof_table, _local_assemblers,
        NumLib::IntegrationOrder{integration_order}, mesh.isAxiallySymmetric(),
        _process_data);
 
    auto add_secondary_variable = [&](std::string const& name,
                                      int const num_components,
                                      auto get_ip_values_function)
    {
        _secondary_variables.addSecondaryVariable(
            name,
            makeExtrapolator(num_components, getExtrapolator(),
                             _local_assemblers,
                             std::move(get_ip_values_function)));
    };
 
    add_secondary_variable("sigma",
                           MathLib::KelvinVector::KelvinVectorType<
                               DisplacementDim>::RowsAtCompileTime,
                           &LocalAssemblerInterface::getIntPtSigma);
 
    add_secondary_variable("epsilon",
                           MathLib::KelvinVector::KelvinVectorType<
                               DisplacementDim>::RowsAtCompileTime,
                           &LocalAssemblerInterface::getIntPtEpsilon);
 
    add_secondary_variable("velocity", DisplacementDim,
                           &LocalAssemblerInterface::getIntPtDarcyVelocity);
 
    add_secondary_variable("fracture_velocity", DisplacementDim,
                           &LocalAssemblerInterface::getIntPtFractureVelocity);
 
    add_secondary_variable("fracture_stress", DisplacementDim,
                           &LocalAssemblerInterface::getIntPtFractureStress);
 
    add_secondary_variable("fracture_aperture", 1,
                           &LocalAssemblerInterface::getIntPtFractureAperture);
 
    add_secondary_variable(
        "fracture_permeability", 1,
        &LocalAssemblerInterface::getIntPtFracturePermeability);
 
    _process_data.element_stresses = MeshLib::getOrCreateMeshProperty<double>(
        const_cast<MeshLib::Mesh&>(mesh), "sigma_avg",
        MeshLib::MeshItemType::Cell,
        MathLib::KelvinVector::KelvinVectorType<
            DisplacementDim>::RowsAtCompileTime);
 
    _process_data.element_velocities = MeshLib::getOrCreateMeshProperty<double>(
        const_cast<MeshLib::Mesh&>(mesh), "velocity_avg",
        MeshLib::MeshItemType::Cell, DisplacementDim);
 
    for (MeshLib::Element const* e : _mesh.getElements())
    {
        if (e->getDimension() < DisplacementDim)
        {
            continue;
        }
 
        updateElementLevelSets(*e, const_cast<MeshLib::Mesh&>(mesh));
    }
 
    _process_data.element_local_jumps =
        MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh), "local_jump_w_avg",
            MeshLib::MeshItemType::Cell, DisplacementDim);
 
    _process_data.element_fracture_stresses =
        MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh), "fracture_stress_avg",
            MeshLib::MeshItemType::Cell, DisplacementDim);
 
    _process_data.element_fracture_velocities =
        MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh), "fracture_velocity_avg",
            MeshLib::MeshItemType::Cell, DisplacementDim);
 
    auto mesh_prop_b = MeshLib::getOrCreateMeshProperty<double>(
        const_cast<MeshLib::Mesh&>(mesh), "fracture_aperture_avg",
        MeshLib::MeshItemType::Cell, 1);
 
    mesh_prop_b->resize(mesh.getNumberOfElements());
    auto const& mesh_prop_matid = *_process_data.mesh_prop_materialIDs;
    for (auto const& fracture_prop : _process_data.fracture_properties)
    {
        for (MeshLib::Element const* e : _mesh.getElements())
        {
            if (e->getDimension() == DisplacementDim)
            {
                continue;
            }
            if (mesh_prop_matid[e->getID()] != fracture_prop.mat_id)
            {
                continue;
            }
            // Mean value for the element. This allows usage of node based
            // properties for aperture.
            (*mesh_prop_b)[e->getID()] =
                fracture_prop.aperture0
                    .getNodalValuesOnElement(*e, /*time independent*/ 0)
                    .mean();
        }
    }
 
    auto mesh_prop_k_f = MeshLib::getOrCreateMeshProperty<double>(
        const_cast<MeshLib::Mesh&>(mesh), "fracture_permeability_avg",
        MeshLib::MeshItemType::Cell, 1);
    mesh_prop_k_f->resize(mesh.getNumberOfElements());
    _process_data.mesh_prop_k_f = mesh_prop_k_f;
 
    auto mesh_prop_fracture_shear_failure =
        MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh), "f_shear_failure",
            MeshLib::MeshItemType::Cell, 1);
    mesh_prop_fracture_shear_failure->resize(mesh.getNumberOfElements());
    _process_data.mesh_prop_fracture_shear_failure =
        mesh_prop_fracture_shear_failure;
 
    auto mesh_prop_nodal_p = MeshLib::getOrCreateMeshProperty<double>(
        const_cast<MeshLib::Mesh&>(mesh), "pressure_interpolated",
        MeshLib::MeshItemType::Node, 1);
    mesh_prop_nodal_p->resize(mesh.getNumberOfNodes());
    _process_data.mesh_prop_nodal_p = mesh_prop_nodal_p;
 
    _process_data.mesh_prop_nodal_forces =
        MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh), "NodalForces",
            MeshLib::MeshItemType::Node, DisplacementDim);
    assert(_process_data.mesh_prop_nodal_forces->size() ==
           DisplacementDim * mesh.getNumberOfNodes());
 
    _process_data.mesh_prop_nodal_forces_jump =
        MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh), "NodalForcesJump",
            MeshLib::MeshItemType::Node, DisplacementDim);
    assert(_process_data.mesh_prop_nodal_forces_jump->size() ==
           DisplacementDim * mesh.getNumberOfNodes());
 
    _process_data.mesh_prop_hydraulic_flow =
        MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh), "VolumetricFlowRate",
            MeshLib::MeshItemType::Node, 1);
    assert(_process_data.mesh_prop_hydraulic_flow->size() ==
           mesh.getNumberOfNodes());
    _process_data.mesh_prop_b = mesh_prop_b;
}

References _local_assemblers, ProcessLib::Process::_mesh, _process_data, ProcessLib::Process::_secondary_variables, MeshLib::Cell, ProcessLib::LIE::HydroMechanics::createLocalAssemblers(), MeshLib::Mesh::getDimension(), MeshLib::Mesh::getElements(), ProcessLib::Process::getExtrapolator(), ProcessLib::LIE::HydroMechanics::HydroMechanicsLocalAssemblerInterface::getIntPtDarcyVelocity(), ProcessLib::LIE::HydroMechanics::HydroMechanicsLocalAssemblerInterface::getIntPtEpsilon(), ProcessLib::LIE::HydroMechanics::HydroMechanicsLocalAssemblerInterface::getIntPtFractureAperture(), ProcessLib::LIE::HydroMechanics::HydroMechanicsLocalAssemblerInterface::getIntPtFracturePermeability(), ProcessLib::LIE::HydroMechanics::HydroMechanicsLocalAssemblerInterface::getIntPtFractureStress(), ProcessLib::LIE::HydroMechanics::HydroMechanicsLocalAssemblerInterface::getIntPtFractureVelocity(), ProcessLib::LIE::HydroMechanics::HydroMechanicsLocalAssemblerInterface::getIntPtSigma(), MeshLib::Mesh::getNumberOfElements(), MeshLib::Mesh::getNumberOfNodes(), MeshLib::getOrCreateMeshProperty(), INFO(), MeshLib::Mesh::isAxiallySymmetric(), ProcessLib::makeExtrapolator(), ProcessLib::Process::name, MeshLib::Node, and updateElementLevelSets().

◆ isLinear()

template<int DisplacementDim>

bool ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::isLinear ( ) const

override

Definition at line 584 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    return false;
}

◆ postTimestepConcreteProcess()

template<int DisplacementDim>

void ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::postTimestepConcreteProcess	(	std::vector< GlobalVector * > const &	x,
		std::vector< GlobalVector * > const &	x_prev,
		double const	t,
		double const	dt,
		int const	process_id )

overridevirtual

Reimplemented from ProcessLib::Process.

Definition at line 521 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    if (process_id == 0)
    {
        DBUG("PostTimestep HydroMechanicsProcess.");
 
        GlobalExecutor::executeSelectedMemberOnDereferenced(
            &HydroMechanicsLocalAssemblerInterface::postTimestep,
            _local_assemblers, getActiveElementIDs(), getDOFTables(x.size()), x,
            x_prev, t, dt, process_id);
    }
 
    DBUG("Compute the secondary variables for HydroMechanicsProcess.");
 
    const auto& dof_table = getDOFTable(process_id);
 
    // Copy displacement jumps in a solution vector to mesh property
    // Remark: the copy is required because mesh properties for primary
    // variables are set during output and are not ready yet when this function
    // is called.
    int g_variable_id = 0;
    {
        const int monolithic_process_id = 0;
        auto const& pvs = getProcessVariables(monolithic_process_id);
        auto const it =
            std::find_if(pvs.begin(), pvs.end(), [](ProcessVariable const& pv)
                         { return pv.getName() == "displacement_jump1"; });
        if (it == pvs.end())
        {
            OGS_FATAL(
                "Didn't find expected 'displacement_jump1' process variable.");
        }
        g_variable_id = static_cast<int>(std::distance(pvs.begin(), it));
    }
 
    MathLib::LinAlg::setLocalAccessibleVector(*x[process_id]);
 
    const int monolithic_process_id = 0;
    ProcessVariable& pv_g =
        this->getProcessVariables(monolithic_process_id)[g_variable_id];
    auto const num_comp = pv_g.getNumberOfGlobalComponents();
    auto& mesh_prop_g = *MeshLib::getOrCreateMeshProperty<double>(
        _mesh, pv_g.getName(), MeshLib::MeshItemType::Node, num_comp);
    for (int component_id = 0; component_id < num_comp; ++component_id)
    {
        auto const& mesh_subset =
            dof_table.getMeshSubset(g_variable_id, component_id);
        for (auto const& l : MeshLib::views::meshLocations(
                 mesh_subset, MeshLib::MeshItemType::Node))
        {
            auto const global_index =
                dof_table.getGlobalIndex(l, g_variable_id, component_id);
            auto const node_id = l.item_id;
            mesh_prop_g[node_id * num_comp + component_id] =
                (*x[process_id])[global_index];
        }
    }
}

References _local_assemblers, ProcessLib::Process::_mesh, DBUG(), NumLib::SerialExecutor::executeSelectedMemberOnDereferenced(), ProcessLib::Process::getActiveElementIDs(), ProcessLib::Process::getDOFTable(), ProcessLib::Process::getDOFTables(), ProcessLib::ProcessVariable::getName(), ProcessLib::ProcessVariable::getNumberOfGlobalComponents(), MeshLib::getOrCreateMeshProperty(), ProcessLib::Process::getProcessVariables(), MeshLib::views::meshLocations(), MeshLib::Node, OGS_FATAL, ProcessLib::LocalAssemblerInterface::postTimestep(), and MathLib::LinAlg::setLocalAccessibleVector().

◆ preTimestepConcreteProcess()

template<int DisplacementDim>

void ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::preTimestepConcreteProcess	(	std::vector< GlobalVector * > const &	x,
		double const	t,
		double const	dt,
		int const	process_id )

overrideprivatevirtual

Reimplemented from ProcessLib::Process.

Definition at line 634 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    DBUG("PreTimestep HydroMechanicsProcess.");
 
    GlobalExecutor::executeSelectedMemberOnDereferenced(
        &HydroMechanicsLocalAssemblerInterface::preTimestep, _local_assemblers,
        getActiveElementIDs(), *_local_to_global_index_map, *x[process_id], t,
        dt);
}

References _local_assemblers, ProcessLib::Process::_local_to_global_index_map, DBUG(), NumLib::SerialExecutor::executeSelectedMemberOnDereferenced(), ProcessLib::Process::getActiveElementIDs(), and ProcessLib::LocalAssemblerInterface::preTimestep().

◆ updateElementLevelSets()

template<int DisplacementDim>

void ProcessLib::LIE::HydroMechanics::HydroMechanicsProcess< DisplacementDim >::updateElementLevelSets	(	MeshLib::Element const &	e,
		MeshLib::Mesh &	mesh )

private

Definition at line 315 of file LIE/HydroMechanics/HydroMechanicsProcess.cpp.

{
    Eigen::Vector3d const pt(getCenterOfGravity(e).asEigenVector3d());
    std::vector<FractureProperty*> e_fracture_props;
    std::unordered_map<int, int> e_fracID_to_local;
    unsigned tmpi = 0;
    for (auto fid : _process_data.vec_ele_connected_fractureIDs[e.getID()])
    {
        e_fracture_props.push_back(&_process_data.fracture_properties[fid]);
        e_fracID_to_local.insert({fid, tmpi++});
    }
    std::vector<JunctionProperty*> e_junction_props;
    std::unordered_map<int, int> e_juncID_to_local;
    tmpi = 0;
    for (auto fid : _process_data.vec_ele_connected_junctionIDs[e.getID()])
    {
        e_junction_props.push_back(&_process_data.junction_properties[fid]);
        e_juncID_to_local.insert({fid, tmpi++});
    }
    std::vector<double> const levelsets(uGlobalEnrichments(
        e_fracture_props, e_junction_props, e_fracID_to_local, pt));
 
    auto update_levelset_property = [&](unsigned const i, int const id,
                                        unsigned const levelset_idx_offset,
                                        unsigned const name_offset)
    {
        auto levelset_property = MeshLib::getOrCreateMeshProperty<double>(
            const_cast<MeshLib::Mesh&>(mesh),
            "levelset" + std::to_string(id + 1 + name_offset),
            MeshLib::MeshItemType::Cell, 1);
        levelset_property->resize(mesh.getNumberOfElements());
        (*levelset_property)[e.getID()] = levelsets[i + levelset_idx_offset];
    };
 
    for (unsigned i = 0; i < e_fracture_props.size(); i++)
    {
        update_levelset_property(i, e_fracture_props[i]->fracture_id, 0, 0);
    }
    for (unsigned i = 0; i < e_junction_props.size(); i++)
    {
        update_levelset_property(i, e_junction_props[i]->junction_id,
                                 e_fracture_props.size(),
                                 _process_data.fracture_properties.size());
    }
}