MeshLayerMapper.cpp

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#include "MeshLayerMapper.h"
 
#include <algorithm>
 
#include "BaseLib/Logging.h"
#include "GeoLib/Raster.h"
#include "MathLib/MathTools.h"
#include "MeshLib/Elements/Hex.h"
#include "MeshLib/Elements/Prism.h"
#include "MeshLib/Elements/Pyramid.h"
#include "MeshLib/Elements/Tet.h"
#include "MeshLib/MeshSurfaceExtraction.h"
#include "MeshLib/Properties.h"
 
namespace MeshLib
{
MeshLib::Mesh* MeshLayerMapper::createStaticLayers(
    MeshLib::Mesh const& mesh, std::vector<float> const& layer_thickness_vector,
    std::string const& mesh_name)
{
    std::vector<float> thickness;
    for (std::size_t i = 0; i < layer_thickness_vector.size(); ++i)
    {
        if (layer_thickness_vector[i] > std::numeric_limits<float>::epsilon())
        {
            thickness.push_back(layer_thickness_vector[i]);
        }
        else
        {
            WARN("Ignoring layer {:d} with thickness {:f}.", i,
                 layer_thickness_vector[i]);
        }
    }
 
    const std::size_t nLayers(thickness.size());
    if (nLayers < 1 || mesh.getDimension() != 2)
    {
        ERR("MeshLayerMapper::createStaticLayers(): A 2D mesh with nLayers > 0 "
            "is required as input.");
        return nullptr;
    }
 
    const std::size_t nNodes = mesh.getNumberOfNodes();
    // count number of 2d elements in the original mesh
    const std::size_t nElems(
        std::count_if(mesh.getElements().begin(), mesh.getElements().end(),
                      [](MeshLib::Element const* elem)
                      { return (elem->getDimension() == 2); }));
 
    const std::size_t nOrgElems(mesh.getNumberOfElements());
    const std::vector<MeshLib::Node*>& nodes = mesh.getNodes();
    const std::vector<MeshLib::Element*>& elems = mesh.getElements();
    std::vector<MeshLib::Node*> new_nodes(nNodes + (nLayers * nNodes));
    std::vector<MeshLib::Element*> new_elems;
    new_elems.reserve(nElems * nLayers);
    MeshLib::Properties properties;
    auto* const materials = properties.createNewPropertyVector<int>(
        "MaterialIDs", MeshLib::MeshItemType::Cell);
    if (!materials)
    {
        ERR("Could not create PropertyVector object 'MaterialIDs'.");
        return nullptr;
    }
 
    materials->reserve(nElems * nLayers);
    double z_offset(0.0);
 
    for (unsigned layer_id = 0; layer_id <= nLayers; ++layer_id)
    {
        // add nodes for new layer
        unsigned node_offset(nNodes * layer_id);
        if (layer_id > 0)
        {
            z_offset += thickness[layer_id - 1];
        }
 
        std::transform(nodes.cbegin(), nodes.cend(),
                       new_nodes.begin() + node_offset,
                       [&z_offset](MeshLib::Node* node) {
                           return new MeshLib::Node((*node)[0], (*node)[1],
                                                    (*node)[2] - z_offset);
                       });
 
        // starting with 2nd layer create prism or hex elements connecting the
        // last layer with the current one
        if (layer_id == 0)
        {
            continue;
        }
 
        node_offset -= nNodes;
        const unsigned mat_id(nLayers - layer_id);
 
        for (unsigned i = 0; i < nOrgElems; ++i)
        {
            const MeshLib::Element* sfc_elem(elems[i]);
            if (sfc_elem->getDimension() < 2)
            {  // ignore line-elements
                continue;
            }
 
            const unsigned nElemNodes(sfc_elem->getNumberOfBaseNodes());
            auto** e_nodes = new MeshLib::Node*[2 * nElemNodes];
 
            for (unsigned j = 0; j < nElemNodes; ++j)
            {
                const unsigned node_id =
                    sfc_elem->getNode(j)->getID() + node_offset;
                e_nodes[j] = new_nodes[node_id + nNodes];
                e_nodes[j + nElemNodes] = new_nodes[node_id];
            }
            if (sfc_elem->getGeomType() == MeshLib::MeshElemType::TRIANGLE)
            {
                // extrude triangles to prism
                new_elems.push_back(new MeshLib::Prism(e_nodes));
            }
            else if (sfc_elem->getGeomType() == MeshLib::MeshElemType::QUAD)
            {
                // extrude quads to hexes
                new_elems.push_back(new MeshLib::Hex(e_nodes));
            }
            else
            {
                OGS_FATAL("MeshLayerMapper: Unknown element type to extrude.");
            }
            materials->push_back(mat_id);
        }
    }
    return new MeshLib::Mesh(mesh_name, new_nodes, new_elems, properties);
}
 
bool MeshLayerMapper::createRasterLayers(
    MeshLib::Mesh const& mesh,
    std::vector<GeoLib::Raster const*> const& rasters,
    double minimum_thickness,
    double noDataReplacementValue)
{
    const std::size_t nLayers(rasters.size());
    if (nLayers < 2 || mesh.getDimension() != 2)
    {
        ERR("MeshLayerMapper::createRasterLayers(): A 2D mesh and at least two "
            "rasters required as input.");
        return false;
    }
 
    auto top = std::make_unique<MeshLib::Mesh>(mesh);
    if (!layerMapping(*top, *rasters.back(), noDataReplacementValue))
    {
        return false;
    }
 
    auto bottom = std::make_unique<MeshLib::Mesh>(mesh);
    if (!layerMapping(*bottom, *rasters[0], 0))
    {
        return false;
    }
 
    this->_minimum_thickness = minimum_thickness;
    std::size_t const nNodes = mesh.getNumberOfNodes();
    _nodes.reserve(nLayers * nNodes);
 
    // number of triangles in the original mesh
    std::size_t const nElems(std::count_if(
        mesh.getElements().begin(), mesh.getElements().end(),
        [](MeshLib::Element const* elem)
        { return (elem->getGeomType() == MeshLib::MeshElemType::TRIANGLE); }));
    _elements.reserve(nElems * (nLayers - 1));
    _materials.reserve(nElems * (nLayers - 1));
 
    // add bottom layer
    std::vector<MeshLib::Node*> const& nodes = bottom->getNodes();
    std::transform(nodes.begin(), nodes.end(), std::back_inserter(_nodes),
                   [](auto const* node) { return new MeshLib::Node(*node); });
 
    // add the other layers
    for (std::size_t i = 0; i < nLayers - 1; ++i)
    {
        addLayerToMesh(*top, i, *rasters[i + 1]);
    }
 
    return true;
}
 
void MeshLayerMapper::addLayerToMesh(const MeshLib::Mesh& dem_mesh,
                                     unsigned layer_id,
                                     GeoLib::Raster const& raster)
{
    const unsigned pyramid_base[3][4] = {
        {1, 3, 4, 2},  // Point 4 missing
        {2, 4, 3, 0},  // Point 5 missing
        {0, 3, 4, 1},  // Point 6 missing
    };
 
    std::size_t const nNodes = dem_mesh.getNumberOfNodes();
    std::vector<MeshLib::Node*> const& top_nodes = dem_mesh.getNodes();
    int const last_layer_node_offset = layer_id * nNodes;
 
    // add nodes for new layer
    for (std::size_t i = 0; i < nNodes; ++i)
    {
        _nodes.push_back(getNewLayerNode(*top_nodes[i],
                                         *_nodes[last_layer_node_offset + i],
                                         raster, _nodes.size()));
    }
 
    std::vector<MeshLib::Element*> const& elems = dem_mesh.getElements();
    std::size_t const nElems(dem_mesh.getNumberOfElements());
 
    for (std::size_t i = 0; i < nElems; ++i)
    {
        MeshLib::Element* elem(elems[i]);
        if (elem->getGeomType() != MeshLib::MeshElemType::TRIANGLE)
        {
            continue;
        }
        unsigned node_counter(3);
        unsigned missing_idx(0);
        std::array<MeshLib::Node*, 6> new_elem_nodes{};
        for (unsigned j = 0; j < 3; ++j)
        {
            new_elem_nodes[j] =
                _nodes[_nodes[last_layer_node_offset + getNodeIndex(*elem, j)]
                           ->getID()];
            new_elem_nodes[node_counter] =
                (_nodes[last_layer_node_offset + getNodeIndex(*elem, j) +
                        nNodes]);
            if (new_elem_nodes[j]->getID() !=
                new_elem_nodes[node_counter]->getID())
            {
                node_counter++;
            }
            else
            {
                missing_idx = j;
            }
        }
 
        switch (node_counter)
        {
            case 6:
                _elements.push_back(new MeshLib::Prism(new_elem_nodes));
                _materials.push_back(layer_id);
                break;
            case 5:
            {
                std::array<MeshLib::Node*, 5> pyramid_nodes{};
                pyramid_nodes[0] = new_elem_nodes[pyramid_base[missing_idx][0]];
                pyramid_nodes[1] = new_elem_nodes[pyramid_base[missing_idx][1]];
                pyramid_nodes[2] = new_elem_nodes[pyramid_base[missing_idx][2]];
                pyramid_nodes[3] = new_elem_nodes[pyramid_base[missing_idx][3]];
                pyramid_nodes[4] = new_elem_nodes[missing_idx];
                _elements.push_back(new MeshLib::Pyramid(pyramid_nodes));
                _materials.push_back(layer_id);
                break;
            }
            case 4:
            {
                std::array<MeshLib::Node*, 4> tet_nodes{};
                std::copy(new_elem_nodes.begin(),
                          new_elem_nodes.begin() + node_counter,
                          tet_nodes.begin());
                _elements.push_back(new MeshLib::Tet(tet_nodes));
                _materials.push_back(layer_id);
                break;
            }
            default:
                continue;
        }
    }
}
 
bool MeshLayerMapper::layerMapping(MeshLib::Mesh const& mesh,
                                   GeoLib::Raster const& raster,
                                   double const nodata_replacement,
                                   bool const ignore_nodata)
{
    if (mesh.getDimension() != 2)
    {
        ERR("MshLayerMapper::layerMapping() - requires 2D mesh");
        return false;
    }
 
    GeoLib::RasterHeader const& header(raster.getHeader());
    const double x0(header.origin[0]);
    const double y0(header.origin[1]);
    const double delta(header.cell_size);
 
    const std::pair<double, double> xDim(
        x0, x0 + header.n_cols * delta);  // extension in x-dimension
    const std::pair<double, double> yDim(
        y0, y0 + header.n_rows * delta);  // extension in y-dimension
 
    const std::size_t nNodes(mesh.getNumberOfNodes());
    const std::vector<MeshLib::Node*>& nodes = mesh.getNodes();
    for (unsigned i = 0; i < nNodes; ++i)
    {
        if (!ignore_nodata && !raster.isPntOnRaster(*nodes[i]))
        {
            // use either default value or elevation from layer above
            nodes[i]->updateCoordinates((*nodes[i])[0], (*nodes[i])[1],
                                        nodata_replacement);
            continue;
        }
 
        double elevation(raster.getValueAtPoint(*nodes[i]));
        constexpr double eps = std::numeric_limits<double>::epsilon();
        if (std::abs(elevation - header.no_data) < eps)
        {
            if (ignore_nodata)
            {
                continue;
            }
            elevation = nodata_replacement;
        }
        else
        {
            elevation = raster.interpolateValueAtPoint(*nodes[i]);
        }
        nodes[i]->updateCoordinates((*nodes[i])[0], (*nodes[i])[1], elevation);
    }
 
    return true;
}
 
bool MeshLayerMapper::mapToStaticValue(MeshLib::Mesh const& mesh,
                                       double const value)
{
    if (mesh.getDimension() != 2)
    {
        ERR("MshLayerMapper::mapToStaticValue() - requires 2D mesh");
        return false;
    }
 
    std::vector<MeshLib::Node*> const& nodes(mesh.getNodes());
    for (MeshLib::Node* node : nodes)
    {
        node->updateCoordinates((*node)[0], (*node)[1], value);
    }
    return true;
}
 
}  // end namespace MeshLib