ChemistryLib::PhreeqcKernelData::PhreeqcKernel Member List

This is the complete list of members for ChemistryLib::PhreeqcKernelData::PhreeqcKernel, including all inherited members.

_aqueous_solution	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
_initial_aqueous_solution	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
_mesh	ChemistryLib::ChemicalSolverInterface
_process_id_to_master_map	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
_reaction_rates	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
active_element_ids_	ChemistryLib::ChemicalSolverInterface	private
activeElementIDs() const	ChemistryLib::ChemicalSolverInterface	inline
callPhreeqc(std::vector< GlobalVector * > &process_solutions)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel
chemical_system_index_map	ChemistryLib::ChemicalSolverInterface
ChemicalSolverInterface(MeshLib::Mesh const &mesh, GlobalLinearSolver &linear_solver_)	ChemistryLib::ChemicalSolverInterface	inline
computeSecondaryVariable(std::size_t const, std::vector< GlobalIndexType > const &)	ChemistryLib::ChemicalSolverInterface	inlinevirtual
configureOutputSettings()	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	inlineprivate
executeSpeciationCalculation(double const dt) override	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	virtual
getComponentList() const	ChemistryLib::ChemicalSolverInterface	inlinevirtual
getConcentration(int const, GlobalIndexType const) const	ChemistryLib::ChemicalSolverInterface	inlinevirtual
getKineticPrefactor(std::size_t reaction_id) const	ChemistryLib::ChemicalSolverInterface	inlinevirtual
getOrCreateInitialAqueousSolution(cxxSolution &aqueous_solution)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
getStoichiometricMatrix() const	ChemistryLib::ChemicalSolverInterface	inlinevirtual
initialize()	ChemistryLib::ChemicalSolverInterface	inlinevirtual
initializeChemicalSystemConcrete(std::vector< double > const &, GlobalIndexType const &, MaterialPropertyLib::Medium const &, ParameterLib::SpatialPosition const &, double const)	ChemistryLib::ChemicalSolverInterface	inlinevirtual
initializePhreeqcGeneralSettings()	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	inlineprivate
linear_solver	ChemistryLib::ChemicalSolverInterface
loadDatabase(std::string const &database)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
PhreeqcKernel(MeshLib::Mesh const &mesh, GlobalLinearSolver &linear_solver, std::size_t const num_chemical_systems, std::vector< std::pair< int, std::string > > const &process_id_to_component_name_map, std::string const &database, AqueousSolution aqueous_solution, std::unique_ptr< EquilibriumReactants > &&equilibrium_reactants, std::unique_ptr< Kinetics > &&kinetic_reactants, std::vector< ReactionRate > &&reaction_rates)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel
reinitializeRates()	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
reset(std::size_t const chemical_system_id)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
setAqueousSolutions(std::vector< GlobalVector * > const &process_solutions)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel
setAqueousSolutionsPrevFromDumpFile()	ChemistryLib::ChemicalSolverInterface	inlinevirtual
setChemicalSystemConcrete(std::vector< double > const &, GlobalIndexType const &, MaterialPropertyLib::Medium const *, MaterialPropertyLib::VariableArray const &, ParameterLib::SpatialPosition const &, double const, double const)	ChemistryLib::ChemicalSolverInterface	inlinevirtual
setConvergenceTolerance()	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	inlineprivate
setTimeStepSize(double const dt)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
tidyEquilibriumReactants(EquilibriumReactants const &equilibrium_reactants)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel	private
updateNodalProcessSolutions(std::vector< GlobalVector * > const &process_solutions, std::size_t const node_id)	ChemistryLib::PhreeqcKernelData::PhreeqcKernel
updatePorosityPostReaction(GlobalIndexType const &, MaterialPropertyLib::Medium const &, double &)	ChemistryLib::ChemicalSolverInterface	inlinevirtual
updateVolumeFractionPostReaction(GlobalIndexType const &, MaterialPropertyLib::Medium const &, ParameterLib::SpatialPosition const &, double const, double const, double const)	ChemistryLib::ChemicalSolverInterface	inlinevirtual
~ChemicalSolverInterface()=default	ChemistryLib::ChemicalSolverInterface	virtual