Detailed Description

Definition at line 23 of file SelfContainedSolver.h.

#include <SelfContainedSolver.h>

Inheritance diagram for ChemistryLib::SelfContainedSolverData::SelfContainedSolver:

Collaboration diagram for ChemistryLib::SelfContainedSolverData::SelfContainedSolver:

Public Member Functions
	SelfContainedSolver (MeshLib::Mesh const &mesh, GlobalLinearSolver &linear_solver, Eigen::SparseMatrix< double > stoichiometric_matrix, std::vector< std::unique_ptr< ChemicalReaction > > chemical_reactions)
Eigen::SparseMatrix< double > const *	getStoichiometricMatrix () const override
double	getKineticPrefactor (std::size_t reaction_id) const override
Public Member Functions inherited from ChemistryLib::ChemicalSolverInterface
	ChemicalSolverInterface (MeshLib::Mesh const &mesh, GlobalLinearSolver &linear_solver_)
std::vector< std::size_t > const &	activeElementIDs () const
virtual void	initialize ()
virtual void	initializeChemicalSystemConcrete (std::vector< double > const &, GlobalIndexType const &, MaterialPropertyLib::Medium const &, ParameterLib::SpatialPosition const &, double const)
virtual void	setChemicalSystemConcrete (std::vector< double > const &, GlobalIndexType const &, MaterialPropertyLib::Medium const *, MaterialPropertyLib::VariableArray const &, ParameterLib::SpatialPosition const &, double const, double const)
virtual void	setAqueousSolutionsPrevFromDumpFile ()
virtual void	executeSpeciationCalculation (double const dt)
virtual double	getConcentration (int const, GlobalIndexType const) const
virtual std::vector< std::string > const	getComponentList () const
virtual void	updateVolumeFractionPostReaction (GlobalIndexType const &, MaterialPropertyLib::Medium const &, ParameterLib::SpatialPosition const &, double const, double const, double const)
virtual void	updatePorosityPostReaction (GlobalIndexType const &, MaterialPropertyLib::Medium const &, double &)
virtual void	computeSecondaryVariable (std::size_t const, std::vector< GlobalIndexType > const &)
virtual	~ChemicalSolverInterface ()=default

Private Attributes
Eigen::SparseMatrix< double >	_stoichiometric_matrix
std::vector< std::unique_ptr< ChemicalReaction > >	_chemical_reactions

Additional Inherited Members
Public Attributes inherited from ChemistryLib::ChemicalSolverInterface
std::vector< GlobalIndexType >	chemical_system_index_map
MeshLib::Mesh const &	_mesh
GlobalLinearSolver &	linear_solver

Constructor & Destructor Documentation

◆ SelfContainedSolver()

ChemistryLib::SelfContainedSolverData::SelfContainedSolver::SelfContainedSolver	(	MeshLib::Mesh const &	mesh,
		GlobalLinearSolver &	linear_solver,
		Eigen::SparseMatrix< double >	stoichiometric_matrix,
		std::vector< std::unique_ptr< ChemicalReaction > >	chemical_reactions )

inline

Definition at line 26 of file SelfContainedSolver.h.

        : ChemicalSolverInterface(mesh, linear_solver),
          _stoichiometric_matrix(stoichiometric_matrix),
          _chemical_reactions(std::move(chemical_reactions))
    {
    }

References ChemistryLib::ChemicalSolverInterface::ChemicalSolverInterface(), _chemical_reactions, _stoichiometric_matrix, and ChemistryLib::ChemicalSolverInterface::linear_solver.

Member Function Documentation

◆ getKineticPrefactor()

double ChemistryLib::SelfContainedSolverData::SelfContainedSolver::getKineticPrefactor ( std::size_t reaction_id ) const

inlineoverridevirtual

Reimplemented from ChemistryLib::ChemicalSolverInterface.

Definition at line 43 of file SelfContainedSolver.h.

    {
        return _chemical_reactions[reaction_id]->getKineticPrefactor();
    }

References _chemical_reactions.

◆ getStoichiometricMatrix()

Eigen::SparseMatrix< double > const * ChemistryLib::SelfContainedSolverData::SelfContainedSolver::getStoichiometricMatrix ( ) const

inlineoverridevirtual

Reimplemented from ChemistryLib::ChemicalSolverInterface.

Definition at line 38 of file SelfContainedSolver.h.

    {
        return &_stoichiometric_matrix;
    }

References _stoichiometric_matrix.

Member Data Documentation

◆ _chemical_reactions

std::vector<std::unique_ptr<ChemicalReaction> > ChemistryLib::SelfContainedSolverData::SelfContainedSolver::_chemical_reactions

private

Definition at line 50 of file SelfContainedSolver.h.

Referenced by SelfContainedSolver(), and getKineticPrefactor().

◆ _stoichiometric_matrix

Eigen::SparseMatrix<double> ChemistryLib::SelfContainedSolverData::SelfContainedSolver::_stoichiometric_matrix

private

Definition at line 49 of file SelfContainedSolver.h.

Referenced by SelfContainedSolver(), and getStoichiometricMatrix().

The documentation for this class was generated from the following file:

ChemistryLib/SelfContainedSolverData/SelfContainedSolver.h