fileIO.cpp

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#include "MeshLib/IO/XDMF/fileIO.h"
 
#include <hdf5.h>
#include <mpi.h>
 
#include "BaseLib/Logging.h"
#include "getCommunicator.h"
 
namespace MeshLib::IO
{
std::filesystem::path partitionFilename(
    std::filesystem::path const& basic_filepath, int const file_group)
{
    std::string const filename = (file_group > 0)
                                     ? basic_filepath.stem().string() + '_' +
                                           std::to_string(file_group) +
                                           basic_filepath.extension().string()
                                     : basic_filepath.filename().string();
    std::filesystem::path const filepathwithextension =
        basic_filepath.parent_path() / filename;
    DBUG("HDF Filepath: {:s}.", filepathwithextension.string());
    return filepathwithextension;
};
 
hid_t createFile(std::filesystem::path const& filepath,
                 unsigned int const n_files)
{
    auto const communicator = getCommunicator(n_files);
    MPI_Comm const comm = communicator.mpi_communicator;
    MPI_Info const info = MPI_INFO_NULL;
    hid_t const plist_id = H5Pcreate(H5P_FILE_ACCESS);
 
    H5Pset_fapl_mpio(plist_id, comm, info);
    H5Pset_coll_metadata_write(plist_id, true);
 
    std::filesystem::path const partition_filename =
        partitionFilename(filepath, communicator.color);
    hid_t file = H5Fcreate(partition_filename.string().c_str(), H5F_ACC_TRUNC,
                           H5P_DEFAULT, plist_id);
    H5Pclose(plist_id);
 
    return file;
}
 
hid_t openHDF5File(std::filesystem::path const& filepath,
                   unsigned int const n_files)
{
    MPI_Comm const comm = getCommunicator(n_files).mpi_communicator;
    MPI_Info info = MPI_INFO_NULL;
    hid_t const plist_id = H5Pcreate(H5P_FILE_ACCESS);
    H5Pset_fapl_mpio(plist_id, comm, info);
    hid_t file = H5Fopen(filepath.string().c_str(), H5F_ACC_RDWR, plist_id);
    H5Pclose(plist_id);
    return file;
}
 
hid_t createHDF5TransferPolicy()
{
    // property list for collective dataset write
    hid_t io_transfer_property = H5Pcreate(H5P_DATASET_XFER);
    H5Pset_dxpl_mpio(io_transfer_property, H5FD_MPIO_COLLECTIVE);
    return io_transfer_property;
}
 
}  // namespace MeshLib::IO